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Report for Sequence Feature Glyma16g21930
Feature Type: gene_model
Chromosome: Gm16
Start: 25268946
stop: 25277431
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g21930
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G76520 AT
Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein | chr1:28715384-28717289 FORWARD LENGTH=390
SoyBase E_val: 1.00E-156 ISS
GO:0009926 GO-bp
Annotation by Michelle Graham. GO Biological Process: auxin polar transport
SoyBase N/A ISS
GO:0015824 GO-bp
Annotation by Michelle Graham. GO Biological Process: proline transport
SoyBase N/A ISS
GO:0019344 GO-bp
Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0009672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity
SoyBase N/A ISS
KOG2722
KOG
Predicted membrane protein
JGI ISS
PF03547 PFAM
Membrane transport protein
JGI ISS
UniRef100_G7L7X2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Medicago truncatula RepID=G7L7X2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MMV2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMV2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g21930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma16g21930
Paralog Evidence Comments
Glyma09g32810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g21930 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g115500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g21930
Transcripts of Glyma16g21930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g21930.2 sequence type=transcript gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAATCTTCGTTGTTTTACTACGACTTTTTCTCTTATTTATACAATTTTTTTATTCGTGGATGCAATGAGTATCTTGTGATTCCGGAACAGCTCTGTTTGCTCTTCACTTTTACCTTCATGAACGCGTACAGTCATTGTCAAAGGATAAGCATAATAGGTTATTTGAAGATTTGGTGTAATGGGGTTCATTCAGCTGCTTTCTGTTGCCTCTTTCCCGGTGATAAAAGTGTTGCTGGTTACTGCAATTGGCTTGTTTCTTGCACTGGATGACATATCAATATTGGGAGAAGATTCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCGTCGCTTGTGGGTAGCAATCTGGCCAAAACGATAACTTTTGAGAGTATTGTTCAGTTGTGGTTCATGCCGTTGAATATTCTTTGCACATTCATACTAGGCTCGGCCTTGGGATGGATTTTGATTAAAATGACAAGGCCTCCGAAACACATGGAAGGTTTAATCTTGGGTTGCTGTTCTGCTGGAAATTTAGGGAACTTGCTTATAGTCATTATTCCAGCTATATGTAAAGAGAGTGGCAATCCTTTTGGAGACTCTGATGTCTGCTATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGATTGGAGCAGTTTTTATATGGTCATATGTTTACAACATCATGAGGATTTCCTCTAGTAGAATTCAAAAAGAAGACAATACAGGCAATGGCATTAACATATTGAAGGCTTCAGCGGAAGCATCAGAGTCACGCACAGACAATTTTTCAGAAACACTTAATCCTACAAAAGACGCCACGGATGATGCATATACCTTATTGCTTCCTCATGCAAAACCAGAGGAAAAAGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCCATTGCCGGATTTATCATTGGTGTAATCTCCCCAATGCGTAATTTCATTATAGGAAGTAGTGCTCCGCTTCATGTGGTTGAAGAATCTGTGTTCATGTTGGGGTATGCATCTCAAAAGTTATTTTAAGCAGTGAATGTTTGAATTAAAGTTGAAAGAATTGAAAAGTATTTTTGCTCTAGAAATAATTATTTTTTCATTTGATGTATTAGAATTGTTTTGTTATGTATTTTAACCTGAATGTACTTTCTTAATTTTAATCTAAACATAGCATAATTTTCTAGTTACAAAAGATGCGAAACCAAAAATTTT
>Glyma16g21930.3 sequence type=transcript gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAATCTTCGTTGTTTTACTACGACTTTTTCTCTTATTTATACAATTTTTTTATTCGTGGATGCAATGAGTATCTTGTGATTCCGGAACAGCTCTGTTTGCTCTTCACTTTTACCTTCATGAACGCGTACAGTCATTGTCAAAGGATAAGCATAATAGGTTATTTGAAGATTTGGTGTAATGGGGTTCATTCAGCTGCTTTCTGTTGCCTCTTTCCCGGTGATAAAAGTGTTGCTGGTTACTGCAATTGGCTTGTTTCTTGCACTGGATGACATATCAATATTGGGAGAAGATTCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCGTCGCTTGTGGGTAGCAATCTGGCCAAAACGATAACTTTTGAGAGTATTGTTCAGTTGTGGTTCATGCCGTTGAATATTCTTTGCACATTCATACTAGGCTCGGCCTTGGGATGGATTTTGATTAAAATGACAAGGCCTCCGAAACACATGGAAGGTTTAATCTTGGGTTGCTGTTCTGCTGGAAATTTAGGGAACTTGCTTATAGTCATTATTCCAGCTATATGTAAAGAGAGTGGCAATCCTTTTGGAGACTCTGATGTCTGCTATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGATTGGAGCAGTTTTTATATGGTCATATGTTTACAACATCATGAGGATTTCCTCTAGTAGAATTCAAAAAGAAGACAATACAGGCAATGGCATTAACATATTGAAGGCTTCAGCGGAAGCATCAGAGTCACGCACAGACAATTTTTCAGAAACACTTAATCCTACAAAAGACGCCACGGATGATGCATATACCTTATTGCTTCCTCATGCAAAACCAGAGGAAAAAGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCCATTGCCGGATTTATCATTGGTGTAATCTCCCCAATGCGTAATTTCATTATAGGAAGTAGTGCTCCGCTTCATGTGGTTGAAGAATCTGTGTTCATGTTGGGTGATGCAGCTGTCCCCACTCTCACTCTTATAATGGGAGCAAACCTACTTAAAGGTTTGAAAGGATCAACTACTCCAGTGTGGACCGTTGTGGGAATTGTAGCTGTTCGCTATATTTTCCTGCCTCTTTTGGGCGTTGCAGTTGTCAAAGGGGCCATACACTTTAGTTTGGTGCATTCAGATGCCTTGTATCAGTTCGTGCTTCTACTTCAATATGCACTTCCGCCTGCCATGAATATAGGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAACTTTCTTCATGTGGCTAGTGTTATGATTTTATTAATATTGCTATTGTCATTATATTTTTTTATTTGAGTATTTTATTATCTAAAACCCACGTAAGATCTCAATTGACTACTTAAGTGGATAGTAAAATCTGTTAAACACCTAAAATTTCATTAGAAATAAATAAATTTTAAGAACT
Coding sequences of Glyma16g21930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g21930.1 sequence type=CDS gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTTCATTCAGCTGCTTTCTGTTGCCTCTTTCCCGGTGATAAAAGTGTTGCTGGTTACTGCAATTGGCTTGTTTCTTGCACTGGATGACATATCAATATTGGGAGAAGATTCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCGTCGCTTGTGGGTAGCAATCTGGCCAAAACGATAACTTTTGAGAGTATTGTTCAGTTGTGGTTCATGCCGTTGAATATTCTTTGCACATTCATACTAGGCTCGGCCTTGGGATGGATTTTGATTAAAATGACAAGGCCTCCGAAACACATGGAAGGTTTAATCTTGGGTTGCTGTTCTGCTGGAAATTTAGGGAACTTGCTTATAGTCATTATTCCAGCTATATGTAAAGAGAGTGGCAATCCTTTTGGAGACTCTGATGTCTGCTATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGATTGGAGCAGTTTTTATATGGTCATATGTTTACAACATCATGAGGATTTCCTCTAGTAGAATTCAAAAAGAAGACAATACAGGCAATGGCATTAACATATTGAAGGCTTCAGCGGAAGCATCAGAGTCACGCACAGACAATTTTTCAGAAACACTTAATCCTACAAAAGACGCCACGGATGATGCATATACCTTATTGCTTCCTCATGCAAAACCAGAGGAAAAAGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCCATTGCCGGATTTATCATTGGTGTAATCTCCCCAATGCGTAATTTCATTATAGGAAGTAGTGCTCCGCTTCATGTGGTTGAAGAATCTGTGTTCATGTTGGGTGATGCAGCTGTCCCCACTCTCACTCTTATAATGGGAGCAAACCTACTTAAAGGTTTGAAAGGATCAACTACTCCAGTGTGGACCGTTGTGGGAATTGTAGCTGTTCGCTATATTTTCCTGCCTCTTTTGGGCGTTGCAGTTGTCAAAGGGGCCATACACTTTAGTTTGGTGCATTCAGATGCCTTGTATCAGTTCGTGCTTCTACTTCAATATGCACTTCCGCCTGCCATGAATATAGGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAACTTTCTTCATGTGGCTAGTGTTATGA
>Glyma16g21930.2 sequence type=CDS gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTTCATTCAGCTGCTTTCTGTTGCCTCTTTCCCGGTGATAAAAGTGTTGCTGGTTACTGCAATTGGCTTGTTTCTTGCACTGGATGACATATCAATATTGGGAGAAGATTCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCGTCGCTTGTGGGTAGCAATCTGGCCAAAACGATAACTTTTGAGAGTATTGTTCAGTTGTGGTTCATGCCGTTGAATATTCTTTGCACATTCATACTAGGCTCGGCCTTGGGATGGATTTTGATTAAAATGACAAGGCCTCCGAAACACATGGAAGGTTTAATCTTGGGTTGCTGTTCTGCTGGAAATTTAGGGAACTTGCTTATAGTCATTATTCCAGCTATATGTAAAGAGAGTGGCAATCCTTTTGGAGACTCTGATGTCTGCTATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGATTGGAGCAGTTTTTATATGGTCATATGTTTACAACATCATGAGGATTTCCTCTAGTAGAATTCAAAAAGAAGACAATACAGGCAATGGCATTAACATATTGAAGGCTTCAGCGGAAGCATCAGAGTCACGCACAGACAATTTTTCAGAAACACTTAATCCTACAAAAGACGCCACGGATGATGCATATACCTTATTGCTTCCTCATGCAAAACCAGAGGAAAAAGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCCATTGCCGGATTTATCATTGGTGTAATCTCCCCAATGCGTAATTTCATTATAGGAAGTAGTGCTCCGCTTCATGTGGTTGAAGAATCTGTGTTCATGTTGGGGTATGCATCTCAAAAGTTATTTTAA
>Glyma16g21930.3 sequence type=CDS gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTTCATTCAGCTGCTTTCTGTTGCCTCTTTCCCGGTGATAAAAGTGTTGCTGGTTACTGCAATTGGCTTGTTTCTTGCACTGGATGACATATCAATATTGGGAGAAGATTCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCGTCGCTTGTGGGTAGCAATCTGGCCAAAACGATAACTTTTGAGAGTATTGTTCAGTTGTGGTTCATGCCGTTGAATATTCTTTGCACATTCATACTAGGCTCGGCCTTGGGATGGATTTTGATTAAAATGACAAGGCCTCCGAAACACATGGAAGGTTTAATCTTGGGTTGCTGTTCTGCTGGAAATTTAGGGAACTTGCTTATAGTCATTATTCCAGCTATATGTAAAGAGAGTGGCAATCCTTTTGGAGACTCTGATGTCTGCTATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGATTGGAGCAGTTTTTATATGGTCATATGTTTACAACATCATGAGGATTTCCTCTAGTAGAATTCAAAAAGAAGACAATACAGGCAATGGCATTAACATATTGAAGGCTTCAGCGGAAGCATCAGAGTCACGCACAGACAATTTTTCAGAAACACTTAATCCTACAAAAGACGCCACGGATGATGCATATACCTTATTGCTTCCTCATGCAAAACCAGAGGAAAAAGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCCATTGCCGGATTTATCATTGGTGTAATCTCCCCAATGCGTAATTTCATTATAGGAAGTAGTGCTCCGCTTCATGTGGTTGAAGAATCTGTGTTCATGTTGGGTGATGCAGCTGTCCCCACTCTCACTCTTATAATGGGAGCAAACCTACTTAAAGGTTTGAAAGGATCAACTACTCCAGTGTGGACCGTTGTGGGAATTGTAGCTGTTCGCTATATTTTCCTGCCTCTTTTGGGCGTTGCAGTTGTCAAAGGGGCCATACACTTTAGTTTGGTGCATTCAGATGCCTTGTATCAGTTCGTGCTTCTACTTCAATATGCACTTCCGCCTGCCATGAATATAGGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAACTTTCTTCATGTGGCTAGTGTTATGA
Predicted protein sequences of Glyma16g21930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g21930.1 sequence type=predicted peptide gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGFIQLLSVASFPVIKVLLVTAIGLFLALDDISILGEDSRKKVNQLVFYVFNPSLVGSNLAKTITFESIVQLWFMPLNILCTFILGSALGWILIKMTRPPKHMEGLILGCCSAGNLGNLLIVIIPAICKESGNPFGDSDVCYQYGMAYAALSMAIGAVFIWSYVYNIMRISSSRIQKEDNTGNGINILKASAEASESRTDNFSETLNPTKDATDDAYTLLLPHAKPEEKVSISRKIKHHLGVISSNLNFKAMFAPSTLGAIAGFIIGVISPMRNFIIGSSAPLHVVEESVFMLGDAAVPTLTLIMGANLLKGLKGSTTPVWTVVGIVAVRYIFLPLLGVAVVKGAIHFSLVHSDALYQFVLLLQYALPPAMNIGTIAQLFGAGESECSVIMLWTYILAAVAVTLWSTFFMWLVL*
>Glyma16g21930.2 sequence type=predicted peptide gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGFIQLLSVASFPVIKVLLVTAIGLFLALDDISILGEDSRKKVNQLVFYVFNPSLVGSNLAKTITFESIVQLWFMPLNILCTFILGSALGWILIKMTRPPKHMEGLILGCCSAGNLGNLLIVIIPAICKESGNPFGDSDVCYQYGMAYAALSMAIGAVFIWSYVYNIMRISSSRIQKEDNTGNGINILKASAEASESRTDNFSETLNPTKDATDDAYTLLLPHAKPEEKVSISRKIKHHLGVISSNLNFKAMFAPSTLGAIAGFIIGVISPMRNFIIGSSAPLHVVEESVFMLGYASQKLF*
>Glyma16g21930.3 sequence type=predicted peptide gene model=Glyma16g21930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGFIQLLSVASFPVIKVLLVTAIGLFLALDDISILGEDSRKKVNQLVFYVFNPSLVGSNLAKTITFESIVQLWFMPLNILCTFILGSALGWILIKMTRPPKHMEGLILGCCSAGNLGNLLIVIIPAICKESGNPFGDSDVCYQYGMAYAALSMAIGAVFIWSYVYNIMRISSSRIQKEDNTGNGINILKASAEASESRTDNFSETLNPTKDATDDAYTLLLPHAKPEEKVSISRKIKHHLGVISSNLNFKAMFAPSTLGAIAGFIIGVISPMRNFIIGSSAPLHVVEESVFMLGDAAVPTLTLIMGANLLKGLKGSTTPVWTVVGIVAVRYIFLPLLGVAVVKGAIHFSLVHSDALYQFVLLLQYALPPAMNIGTIAQLFGAGESECSVIMLWTYILAAVAVTLWSTFFMWLVL*