Glyma16g21891 - SoyBase

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Report for Sequence Feature Glyma16g21891

Feature Type:	gene_model
Chromosome:	Gm16
Start:	25229574
stop:	25230569
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g21891

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00130	AT	Annotation by Michelle Graham. TAIR10: ATPase, F0 complex, subunit B/B', bacterial/chloroplast \| chrC:11529-12798 REVERSE LENGTH=184	SoyBase	E_val: 2.00E-57	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0015986	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled proton transport	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0042776	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial ATP synthesis coupled proton transport	SoyBase	N/A	ISS
GO:0045333	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular respiration	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0045259	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting ATP synthase complex	SoyBase	N/A	ISS
GO:0045263	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting ATP synthase complex, coupling factor F(o)	SoyBase	N/A	ISS
GO:0015078	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0046933	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism	SoyBase	N/A	ISS
PF00430	PFAM	ATP synthase B/B' CF(0)	JGI		ISS
UniRef100_Q2PMS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: ATP synthase subunit b, chloroplastic n=1 Tax=Glycine max RepID=ATPF_SOYBN	SoyBase	E_val: 8.00E-68	ISS
UniRef100_Q2PMS9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase subunit b, chloroplastic n=1 Tax=Glycine max RepID=ATPF_SOYBN	SoyBase	E_val: 8.00E-68	ISS

Expression Patterns of Glyma16g21891

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g21891 not represented in the dataset	Glyma16g21891 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g21891 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g115200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g21891

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g21891

Limit To All Plant Sequences

>Glyma16g21891.1   sequence type=CDS   gene model=Glyma16g21891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGCATTTATTGAAGAATTACGGGAAGGGGCCATTGAAAAACTGGAAAAAGCCCAAGCCCACTTAAGGAAAGTCGAAACGGAAGCAGATCGATTTTGGGTGAATGGCTATTCTAAGATTGACCGAGAAAAATTGAATTTAATTAATTCAAATTATATGACTTTGGAACAATTAGAAAATTACAAAAACAAAGCCATTCATTTTGAACAACAAAGAGTGATTAATCAAGTCCGACAATGGGTTTTACAACAAGCCTTACAGGAAGCTCTAGGAACTCTAAAGAGTTGCTTGAACAACGAGTTACATTTACGTACTGCCAGTGCTAATATTGGCATGTTTGGGACGATGAAAGAAAAAATAACTGATTAG

Predicted protein sequences of Glyma16g21891

Limit To All Plant Sequences

>Glyma16g21891.1   sequence type=predicted peptide   gene model=Glyma16g21891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIAFIEELREGAIEKLEKAQAHLRKVETEADRFWVNGYSKIDREKLNLINSNYMTLEQLENYKNKAIHFEQQRVINQVRQWVLQQALQEALGTLKSCLNNELHLRTASANIGMFGTMKEKITD*

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