SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G76490 | AT | Annotation by Michelle Graham. TAIR10: hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642 | SoyBase | E_val: 0 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0008299 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0015936 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme A metabolic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019287 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate pathway | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0060964 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004420 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0042282 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxymethylglutaryl-CoA reductase activity | SoyBase | N/A | ISS |
| GO:0050661 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADP binding | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG2480 | KOG | 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase | JGI | ISS | |
| PTHR10572 | Panther | HMG-COA REDUCTASE | JGI | ISS | |
| PF00368 | PFAM | Hydroxymethylglutaryl-coenzyme A reductase | JGI | ISS | |
| UniRef100_E0X6S2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=Glycyrrhiza uralensis RepID=E0X6S2_GLYUR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B625 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B625 related cluster n=1 Tax=unknown RepID=UPI000233B625 | SoyBase | E_val: 0 | ISS |
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Glyma16g21620 not represented in the dataset |
Glyma16g21620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g32850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g113000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g21620.2 sequence type=CDS gene model=Glyma16g21620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGTTCACCGAAGACCCATTCCTTCTTCCGGCGAACACCGACAAACCCAGAAGCTGAAGACCACCACCACCACCACCACCGATTCGAAATCGCAATCGCAGGCGCTTCTGCCTCTCTACCTCACCAACGCCCTCTTCTTCGGGGTGTTCTTCTCCGTCGCGTACTTCCTCCTCCACCGCTGGCGCGAGAAGATCCGCACCGCCACTCCCCTCCACGCCGTCAGCCCCGCCGAGACCGCCGCCATAGTCTCCCTCGTCGCCTCCGCCGTCTACCTCCTCGGCTTCTTCGGCGTTGCCTCCCGCGCCTCCCTCGACGAGCTATCCGACGACGAGATCATCCTCAAGGAGGACTCCCGCGCCCTGGGCCCATGCCCCGCGGCGCTGGCGGACTCCTCCTGCCTGCTCCCCAACAAAATTCAAAACCAATTCCCTCTATCACCCAAGGCCATCCACAGCGTGACGAAGGAACCACAAGTGGACAGCCCAGTCCCCATCTCCTCGTTCTCGGATGAGGACGAGGAGATCGTACAAGCCGTAGTGTCGGGCTCCATCCCATCCTACTCACTCGAGTCGCGGCTCGGCGACACACGCCGGGCCACGGCCATCAGGCATGAGGTGGTGCAGAGGCTGACTTCCCGATCCCTGTCAGGTTTACCCCTGGAAGGTTTCAACTACGACTCAATATTGGGGCAGTGCTGTGAGATGCCGATAGGGTTCGTGCAGATCCCCGTGGGAGTAGCGGGACCACTGTTGTTGGACGGGAAGGAGTACACCGTGCCCATGGCCACCACTGAAGGGTGTCTCGTTGCGAGCACCAACAGAGGGTGCAAAGCTATCCACGTCTCCGGTGGGGCCTCCTCGGTGTTGCTCAGAGATGGCATGACCAGAGCACCCGTTGTTCGGTTACCCTCCGCTCAGCGCGCCGCGCAGTTGAAGTTCTTCTTGGAGGATCCTCTCAACTTCGATTCGCTTGCTGTCGTTTTCAATAAGTCAAGCAGATTTGCCAGGTTGCAGAACATTCAGTGTGCTATTGCGGGCAAGAATCTGTACATGAGATTCCGATGCAGCACTGGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTTCTTGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTGGCAATTTCTGTTCGGACAAGAAAGCCGCAGCCGTGAATTGGATTGAAGGGCGTGGCAAGTCTGTGGTGTGTGAGGCCATAATTAAGGAGGATGTTGTGAAGAAGGTGTTGAAAACCAGTGTGGAGGCCCTGGTCGAACTTAATATGCTCAAAAACCTTACGGGCTCAGCCATGGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCTAGCAATATTGTGTCTGCTATCTACATTGCCACTGGTCAGGATCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTTAATTTACTTGGTGTCAAGGGTGCCAATAAAGAATCTCCCGGTGCAAATTCTAGGCTACTGGCCACCATTGTAGCCGGTTCAGTCCTAGCTGGGGAACTATCACTCATGTCTGCAATTGCAGCTGGACAACTTGTTAAGAGCCACATGAAATACAACAGATCTAGCAGGGATATATCTACAATTGTCCAATGA
>Glyma16g21620.2 sequence type=predicted peptide gene model=Glyma16g21620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVHRRPIPSSGEHRQTQKLKTTTTTTTDSKSQSQALLPLYLTNALFFGVFFSVAYFLLHRWREKIRTATPLHAVSPAETAAIVSLVASAVYLLGFFGVASRASLDELSDDEIILKEDSRALGPCPAALADSSCLLPNKIQNQFPLSPKAIHSVTKEPQVDSPVPISSFSDEDEEIVQAVVSGSIPSYSLESRLGDTRRATAIRHEVVQRLTSRSLSGLPLEGFNYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIHVSGGASSVLLRDGMTRAPVVRLPSAQRAAQLKFFLEDPLNFDSLAVVFNKSSRFARLQNIQCAIAGKNLYMRFRCSTGDAMGMNMVSKGVQNVLDFLQDDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEDVVKKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDISTIVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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