SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34750 | AT | Annotation by Michelle Graham. TAIR10: RNA polymerase I specific transcription initiation factor RRN3 protein | chr2:14660449-14663792 REVERSE LENGTH=613 | SoyBase | E_val: 0 | ISS |
| GO:0006360 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase I promoter | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2434 | KOG | RNA polymerase I transcription factor | JGI | ISS | |
| PTHR12790 | Panther | TRANSCRIPTION INITIATION FACTOR IA (RRN3) | JGI | ISS | |
| PF05327 | PFAM | RNA polymerase I specific transcription initiation factor RRN3 | JGI | ISS | |
| UniRef100_B9SEL3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor ia, putative n=1 Tax=Ricinus communis RepID=B9SEL3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MMT8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMT8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g21590 not represented in the dataset |
Glyma16g21590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g32870 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g112800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g21590.4 sequence type=transcript gene model=Glyma16g21590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCTCAAGACCCTTGTTGCTGTTCCCTCTTCGTAGCCGCAATTGTTCACTCTTCCTTCGCGAAGAAGAGGTAACAGCATCCGACACCAGCGCCAGTTACCGTTTTCCGCGCGCTTCCTTCCTTCTCGAAACGCCGTCGTTTTGCTACCACACCTATATTTAGCATACTCCTTCGAACCTCCTTTTTCTCACCGACGCAGCTTCCGGTTTTAAGAGAGCATGGGAAGGGTTCAGGTGAATAACAAGGAAGAATTTTCTCAAATGGAGAACGATGATTTCAGTGATTCACAGTTAGTTCGTCACTTCAGAGGCGTGCTTGTTGCAGTAACAACTGGTGATCGAGAGAATTACGACGAGCTCGTCGGTTATTTGCACCCGAAGAAGAATCTTAATCCTGATGAGGTTGCTATACTTGTGACGACTTTGAAGGCGCTTTCTGGAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTGTTTCGAGAATGAGCCTCTGGAATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAACATTTTGTGCCGCCTTTTTACCTCTTAGATTCTCTGAGACAGGAGAATGGAATTGACAGAAAAAATAAAGTTCTGTCACGGGTACATGCAGCTTTGAAAGAGATAGCTGATTTGGTGCCTCTTGCACCTTTGCGACTATCTCCAATAGTTATCCAGAAAATGCCAAGTGTCTTCAGTAAGGAAACTGAGATTGTCATGTATGTCGAGAATATGTTAAGGCTGGAGAGTGGTGCAATTGGAGAAACTGTCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATGTGGAAATTGGATGGGATGGAATCCTGCAAGAAGATGCCAAAGGCATATTTGAAATGGAGTTAGAAGATGTTACTGAATTTGCAGATGAGGATGAGAATTGTGATAGTATGCCTCCGTCAGAGTTATTAAATAGAAAAAATTTGCAAGGCAACTTGGTTGTTGAGAAATTAGATAGCCTAATGGTGCTGGCATTTTTGCACCTTGAATCCTGTCAAAGCAGTGGCCGTTTGACTGAGGTATTCGATACTCTACTAGCTTCATTTCAGAGAACCGTATTGAATGCGTACAAGTCAAAATTTACCCAGTATGTGATGTTCTATGCATGTGCACTGGACCCTGAAGGATGTGGTGTGAAATTTGCCATGGTTCTTGCTGATATGTTTGGATGTGATGTTAATCCCCCTATTACTAGGATGAGTGCTGCTGCTTATCTTGCTAGTTATTTGACTCGTGCAAAGTTCCTTTCAGCTGCATTGGTCACTAACATCATACAAAGCTTGGTTGATTGGTGTTATGCATATTGCAAGTTACGTGATTTTGATATGAACCCACGAGCACATCAAGTTTTTTATTCTGGGTGCCAGGCCATTATGTATATTCTGTGTTTTCGCATGAGATCTTTGATGGATATTCCTAGGCTTAAATTGCAGCTGCTTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGTCTGATCTTTCCAAGGCTTTTGGCGGGATTGATAGACTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGATGATGATGACAATGACGAACTCAGTGATAGTGGCAGTGAAGTATCAGATGATGATTTTATCGACAGGAACACAAAGGATATGATTGATGATGATATGATGGTGAGCGTTGAAGGTTTTGATTTTAACCCTGACTTGAACAAAATGTCTATAACCCCCAGAAAATCTTTTAAACATGGGTTTGAGACACAGTTGAATCAATGTAAGCGAATGCCAGCTAGAATCAGACCATCCACTAGTCCGGAGTCTCTGTGATACCTATCTGCTTGTGATCACTTTTACGTAAAATAGGAAATCTGTCGATTTTGCAGTGTTCATTACAGGAACTAATCAGCATAGTGGTGTCCTAAAAAATAGGGCATTGATATTTTTTGGGCCGTTGTAATTTTGGATGAGTCCTATACAACTACTTAAAAGTAAAGTGTGAAATTATAGCCGTTGATTTAAGTAATTCTGCACATTAGAGAAGCAGAGACAAATTCGTAATGTTCATACAGTATTCATTTTCTACTGTGTTAAAGTGAGTAGGAGCAGCAAACTCTAAGATTCGTTCCCTGCTATATTGTAAGTATAATTTATGTTTTGAGGATACGCTACATGAAATACAGTATTTGTTGAGTTGGAGGACAAAAGAAGTGTGCGTATAAGTCTATTATTTTTGTGCGCAGGTCTGAATCCAACATGGTTTGTGTACGGTATTTGAATTAAATTCCTATGTTTTGAAGCTCT
>Glyma16g21590.3 sequence type=CDS gene model=Glyma16g21590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGGGTTCAGGTGAATAACAAGGAAGAATTTTCTCAAATGGAGAACGATGATTTCAGTGATTCACAGTTAGTTCGTCACTTCAGAGGCGTGCTTGTTGCAGTAACAACTGGTGATCGAGAGAATTACGACGAGCTCGTCGGTTATTTGCACCCGAAGAAGAATCTTAATCCTGATGAGGTTGCTATACTTGTGACGACTTTGAAGGCGCTTTCTGGAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTGTTTCGAGAATGAGCCTCTGGAATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAACATTTTGTGCCGCCTTTTTACCTCTTAGATTCTCTGAGACAGGAGAATGGAATTGACAGAAAAAATAAAGTTCTGTCACGGGTACATGCAGCTTTGAAAGAGATAGCTGATTTGGTGCCTCTTGCACCTTTGCGACTATCTCCAATAGTTATCCAGAAAATGCCAAGTGTCTTCAGTAAGGAAACTGAGATTGTCATGTATGTCGAGAATATGTTAAGGCTGGAGAGTGGTGCAATTGGAGAAACTGTCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATGTGGAAATTGGATGGGATGGAATCCTGCAAGAAGATGCCAAAGGCATATTTGAAATGGAGTTAGAAGATGTTACTGAATTTGCAGATGAGGATGAGAATTGTGATAGTATGCCTCCGTCAGAGTTATTAAATAGAAAAAATTTGCAAGGCAACTTGGTTGTTGAGAAATTAGATAGCCTAATGGTGCTGGCATTTTTGCACCTTGAATCCTGTCAAAGCAGTGGCCGTTTGACTGAGGTATTCGATACTCTACTAGCTTCATTTCAGAGAACCGTATTGAATGCGTACAAGTCAAAATTTACCCAGTATGTGATGTTCTATGCATGTGCACTGGACCCTGAAGGATGTGGTGTGAAATTTGCCATGGTTCTTGCTGATATGTTTGGATGTGATGTTAATCCCCCTATTACTAGGATGAGTGCTGCTGCTTATCTTGCTAGTTATTTGACTCGTGCAAAGTTCCTTTCAGCTGCATTGGTCACTAACATCATACAAAGCTTGGTTGATTGGTGTTATGCATATTGCAAGTTACGTGATTTTGATATGAACCCACGAGCACATCAAGTTTTTTATTCTGGGTGCCAGGCCATTATGTATATTCTGTGTTTTCGCATGAGATCTTTGATGGATATTCCTAGGCTTAAATTGCAGCTGCTTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGTCTGATCTTTCCAAGGCTTTTGGCGGGATTGATAGACTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGATGATGATGACAATGACGAACTCAGTGATAGTGGCAGTGAAGTATCAGATGATGATTTTATCGACAGGAACACAAAGGATATGATTGATGATGATATGATGGTGAGCGTTGAAGGTTTTGATTTTAACCCTGACTTGAACAAAATGTCTATAACCCCCAGAAAATCTTTTAAACATGGGTTTGAGACACAGTTGAATCAATGTAAGCGAATGCCAGCTAGAATCAGACCATCCACTAGTCCGGAGTCTCTGTGA >Glyma16g21590.4 sequence type=CDS gene model=Glyma16g21590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGGGTTCAGGTGAATAACAAGGAAGAATTTTCTCAAATGGAGAACGATGATTTCAGTGATTCACAGTTAGTTCGTCACTTCAGAGGCGTGCTTGTTGCAGTAACAACTGGTGATCGAGAGAATTACGACGAGCTCGTCGGTTATTTGCACCCGAAGAAGAATCTTAATCCTGATGAGGTTGCTATACTTGTGACGACTTTGAAGGCGCTTTCTGGAGCAGTGTCCTATATAGATTCTGTTCATCATGAATCCCTGCTCTTTGCTGTTTCGAGAATGAGCCTCTGGAATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAACATTTTGTGCCGCCTTTTTACCTCTTAGATTCTCTGAGACAGGAGAATGGAATTGACAGAAAAAATAAAGTTCTGTCACGGGTACATGCAGCTTTGAAAGAGATAGCTGATTTGGTGCCTCTTGCACCTTTGCGACTATCTCCAATAGTTATCCAGAAAATGCCAAGTGTCTTCAGTAAGGAAACTGAGATTGTCATGTATGTCGAGAATATGTTAAGGCTGGAGAGTGGTGCAATTGGAGAAACTGTCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATGTGGAAATTGGATGGGATGGAATCCTGCAAGAAGATGCCAAAGGCATATTTGAAATGGAGTTAGAAGATGTTACTGAATTTGCAGATGAGGATGAGAATTGTGATAGTATGCCTCCGTCAGAGTTATTAAATAGAAAAAATTTGCAAGGCAACTTGGTTGTTGAGAAATTAGATAGCCTAATGGTGCTGGCATTTTTGCACCTTGAATCCTGTCAAAGCAGTGGCCGTTTGACTGAGGTATTCGATACTCTACTAGCTTCATTTCAGAGAACCGTATTGAATGCGTACAAGTCAAAATTTACCCAGTATGTGATGTTCTATGCATGTGCACTGGACCCTGAAGGATGTGGTGTGAAATTTGCCATGGTTCTTGCTGATATGTTTGGATGTGATGTTAATCCCCCTATTACTAGGATGAGTGCTGCTGCTTATCTTGCTAGTTATTTGACTCGTGCAAAGTTCCTTTCAGCTGCATTGGTCACTAACATCATACAAAGCTTGGTTGATTGGTGTTATGCATATTGCAAGTTACGTGATTTTGATATGAACCCACGAGCACATCAAGTTTTTTATTCTGGGTGCCAGGCCATTATGTATATTCTGTGTTTTCGCATGAGATCTTTGATGGATATTCCTAGGCTTAAATTGCAGCTGCTTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGTCTGATCTTTCCAAGGCTTTTGGCGGGATTGATAGACTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGATGATGATGACAATGACGAACTCAGTGATAGTGGCAGTGAAGTATCAGATGATGATTTTATCGACAGGAACACAAAGGATATGATTGATGATGATATGATGGTGAGCGTTGAAGGTTTTGATTTTAACCCTGACTTGAACAAAATGTCTATAACCCCCAGAAAATCTTTTAAACATGGGTTTGAGACACAGTTGAATCAATGTAAGCGAATGCCAGCTAGAATCAGACCATCCACTAGTCCGGAGTCTCTGTGA
>Glyma16g21590.3 sequence type=predicted peptide gene model=Glyma16g21590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRVQVNNKEEFSQMENDDFSDSQLVRHFRGVLVAVTTGDRENYDELVGYLHPKKNLNPDEVAILVTTLKALSGAVSYIDSVHHESLLFAVSRMSLWNYGIDIMDALLELIISLAASNGKYIDWCLEMLVKHFVPPFYLLDSLRQENGIDRKNKVLSRVHAALKEIADLVPLAPLRLSPIVIQKMPSVFSKETEIVMYVENMLRLESGAIGETVGSIMLPALVDRLLELDVEIGWDGILQEDAKGIFEMELEDVTEFADEDENCDSMPPSELLNRKNLQGNLVVEKLDSLMVLAFLHLESCQSSGRLTEVFDTLLASFQRTVLNAYKSKFTQYVMFYACALDPEGCGVKFAMVLADMFGCDVNPPITRMSAAAYLASYLTRAKFLSAALVTNIIQSLVDWCYAYCKLRDFDMNPRAHQVFYSGCQAIMYILCFRMRSLMDIPRLKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKAAQLFMASESFVFDDMLESDLSKAFGGIDRLDMFFPFDPCLLKKSESYIRPHFVRWSKVRTTYDDDDNDELSDSGSEVSDDDFIDRNTKDMIDDDMMVSVEGFDFNPDLNKMSITPRKSFKHGFETQLNQCKRMPARIRPSTSPESL* >Glyma16g21590.4 sequence type=predicted peptide gene model=Glyma16g21590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRVQVNNKEEFSQMENDDFSDSQLVRHFRGVLVAVTTGDRENYDELVGYLHPKKNLNPDEVAILVTTLKALSGAVSYIDSVHHESLLFAVSRMSLWNYGIDIMDALLELIISLAASNGKYIDWCLEMLVKHFVPPFYLLDSLRQENGIDRKNKVLSRVHAALKEIADLVPLAPLRLSPIVIQKMPSVFSKETEIVMYVENMLRLESGAIGETVGSIMLPALVDRLLELDVEIGWDGILQEDAKGIFEMELEDVTEFADEDENCDSMPPSELLNRKNLQGNLVVEKLDSLMVLAFLHLESCQSSGRLTEVFDTLLASFQRTVLNAYKSKFTQYVMFYACALDPEGCGVKFAMVLADMFGCDVNPPITRMSAAAYLASYLTRAKFLSAALVTNIIQSLVDWCYAYCKLRDFDMNPRAHQVFYSGCQAIMYILCFRMRSLMDIPRLKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKAAQLFMASESFVFDDMLESDLSKAFGGIDRLDMFFPFDPCLLKKSESYIRPHFVRWSKVRTTYDDDDNDELSDSGSEVSDDDFIDRNTKDMIDDDMMVSVEGFDFNPDLNKMSITPRKSFKHGFETQLNQCKRMPARIRPSTSPESL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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