Glyma16g21111 - SoyBase

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Report for Sequence Feature Glyma16g21111

Feature Type:	gene_model
Chromosome:	Gm16
Start:	23778440
stop:	23784397
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g21111

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61780	AT	Annotation by Michelle Graham. TAIR10: TUDOR-SN protein 2 \| chr5:24822012-24826641 FORWARD LENGTH=985	SoyBase	E_val: 3.00E-128	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009306	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein secretion	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016442	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: RNA-induced silencing complex	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0004518	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nuclease activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR12302	Panther	EBNA2 BINDING PROTEIN P100	JGI		ISS
PF00565	PFAM	Staphylococcal nuclease homologue	JGI		ISS
PF00567	PFAM	Tudor domain	JGI		ISS
UniRef100_G7J2R6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclease domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J2R6_MEDTR	SoyBase	E_val: 5.00E-149	ISS
UniRef100_I1KP14	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KP14_SOYBN	SoyBase	E_val: 1.00E-175	ISS

Expression Patterns of Glyma16g21111

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g21111 not represented in the dataset	Glyma16g21111 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g21111 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma16g21111

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g21111

Limit To All Plant Sequences

>Glyma16g21111.1   sequence type=CDS   gene model=Glyma16g21111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATGCAACCCATACAAGATTACTATTTTGTGTTCGACAAAAATGGATATTTTGCAGGTCATTGTGAAGCTGAGGATGGCATTGAATAGAAGACTCCAAGAAGATTGGGCCAAAGATGCAAGAGAAGACCCTAGGGTTCTCATGAGCCTTAGGATTCCTGGTGTTGCTGAGGCATCCATCAGAAATCTACCTCCATCGACCATTGGTGATGCTAGCATCTTTAATGCTAAGGCTTTATTAGATGCTAACAAGGGCAATCCCATGGAAGGAATTGTTGAGCAAACTCGTGATGGCAGTACCCTACGTGTCTATTTCCTCCCAGAGTTTCAGTTTGTCCAAGCCCCACAAATGGGAAGGAGAGTTGTACCTGAAAGTGTTGCTGAACCAGAGGTTATAGCTAATGCAACTAATGGAGATGTTACTGGGGAACCTCAAGCCCTACTAACATCTGCCCAAAGACTTGTAGCCCCTGCATCTGTTGAAACTGCTACTGATCCTTTAGCACCTGAAGCTAAATTTTTCACTAAGATTAGAGTTCGGATTATCTTGGAAGGTGTTGATAAGTACAACAATTTGATTGGAAGAGGCAAAGTGGAAGTTGAAAACTTCAGACCTTCAGGCAAAGAAAAACAATTAAAAATTTGCACAAACTATGTACTACTAGCAACAAATTCAAAGGCAGTACATGACCAGAATCTTACAGGAAAGGTAAAATTTTCTCTAATCATTGGATTTGGAGAGAGATCAAACTACTATGATGCTCTTCTTACTGCTGAATCACGTGCTATTTTTGGAAAAAAAAATATCCATTATGCCAAGGATTCTCCAGTCATGCATATAACTAGTGAGAAAAATGCATCAGCAAAGAAAGCCAAAGATTTCTTGCATTTCCTTCATCGAAGTAGAAAAATCCTTGTTGTTGTGGAATATGTCCTTGGTGGCCATCGCTTTAAATTGTTAATTCCAAAAGAAACTTGCAATATTGCCTTTTCATTTTTTGGTGTCAAATGTCCTAGTCGCGATAAGCCATATTCAGACGAAGACATCGCACTCATGAGGTGGAAAATAATGCAGAGAGATGTTGAGATTGAGGTAGAGACTTCAAGGACCAATATGGCAATTACACTGGTCAAAGCTGGTCTTGCAAAGTTGCAAACCTCCTTTGGCAATGACAGAATTCCTGATTTTCATCTTTTGGAGCAAGCCGAACAATCTGCCAAGAAGCAAAAGCTAAAAATTTGGGAGAATTATGTTGAAGGGGAGGAAGTATCTAATGGTGTACCTGCTGAGAACAAACAGCAAGAAGTGCTCAAGGTTCTTATAATAGAAGTCTCGGGTAGAGGCAAATTCTATGTCCAGCTTATTGAGGATCAAAGGATAGCATCCATTCAACAACAACTTTCTTTTTTGAACCTTCAAGAAGCTCGAGCTTTCAATCCTAAGAAGGGTGACATGGTCCTTTGTCTTTTTGGTGCTGATAAATCTTGGTATCGGGCAATGGTAGTCAATGGACCTCAAGGACCTGTTGAATCTTCAAATGACATGTTTGAATTATTCTACATTGATTATGGAAATCAAGAAGTAGTACCTTACTCTCATCTACAACCTATTGATCCATCTGTATCTGTTATTCCTGGTATTGCATAA

Predicted protein sequences of Glyma16g21111

Limit To All Plant Sequences

>Glyma16g21111.1   sequence type=predicted peptide   gene model=Glyma16g21111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCNPYKITILCSTKMDILQVIVKLRMALNRRLQEDWAKDAREDPRVLMSLRIPGVAEASIRNLPPSTIGDASIFNAKALLDANKGNPMEGIVEQTRDGSTLRVYFLPEFQFVQAPQMGRRVVPESVAEPEVIANATNGDVTGEPQALLTSAQRLVAPASVETATDPLAPEAKFFTKIRVRIILEGVDKYNNLIGRGKVEVENFRPSGKEKQLKICTNYVLLATNSKAVHDQNLTGKVKFSLIIGFGERSNYYDALLTAESRAIFGKKNIHYAKDSPVMHITSEKNASAKKAKDFLHFLHRSRKILVVVEYVLGGHRFKLLIPKETCNIAFSFFGVKCPSRDKPYSDEDIALMRWKIMQRDVEIEVETSRTNMAITLVKAGLAKLQTSFGNDRIPDFHLLEQAEQSAKKQKLKIWENYVEGEEVSNGVPAENKQQEVLKVLIIEVSGRGKFYVQLIEDQRIASIQQQLSFLNLQEARAFNPKKGDMVLCLFGADKSWYRAMVVNGPQGPVESSNDMFELFYIDYGNQEVVPYSHLQPIDPSVSVIPGIA*

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