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Report for Sequence Feature Glyma16g21070

Feature Type:gene_model
Chromosome:Gm16
Start:23686685
stop:23687358
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g21070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27140AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr2:11598496-11599264 REVERSE LENGTH=224 SoyBaseE_val: 8.00E-15ISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B9RQ27UniRef Annotation by Michelle Graham. Most informative UniRef hit: Small heat-shock protein, putative n=1 Tax=Ricinus communis RepID=B9RQ27_RICCO SoyBaseE_val: 4.00E-12ISS
UniRef100_I1M7E2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M7E2_SOYBN SoyBaseE_val: 2.00E-51ISS

Expression Patterns of Glyma16g21070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g21070 not represented in the dataset
Glyma16g21070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g21070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g110200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g21070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g21070
>Glyma16g21070.1   sequence type=CDS   gene model=Glyma16g21070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACTTTTCCAGTTTCAATGCAACTCAAGAAAGTATTATACAATTGGAAAGCTTGAAGTTGGATTTTCAAATCTTAATAGGAACAAATATAGTGAATGCAAGTTTTAGAAGGGATCAATTGAATGTTCAAGTGACCTCAAAGCTCACCCTAAGGCTAATGGGTGAACGACTGATCACTGACAACAGATGGCATCGTTTCAATCTAGAATTGCCTCTTCTTTCTGATTATGACACCGACAGTGTGACTGCCAAGTTTGAGGGTGCTAAGATATCAATTAAATTTGGAGAACTTTCACAGACTAAGCGTAAGGAAACATTAATAACTCCTCCATCACAAAAAATTGAACATCAAAAGCCAACCCAAGAAGATGTGTGA
Predicted protein sequences of Glyma16g21070
>Glyma16g21070.1   sequence type=predicted peptide   gene model=Glyma16g21070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFSSFNATQESIIQLESLKLDFQILIGTNIVNASFRRDQLNVQVTSKLTLRLMGERLITDNRWHRFNLELPLLSDYDTDSVTAKFEGAKISIKFGELSQTKRKETLITPPSQKIEHQKPTQEDV*






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