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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma16g20810

Feature Type:gene_model
Chromosome:Gm16
Start:23482278
stop:23483373
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45775AT Annotation by Michelle Graham. TAIR10: Ribosomal L5P family protein | chr5:18565281-18566496 REVERSE LENGTH=182 SoyBaseE_val: 2.00E-36ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR11994Panther 60S RIBOSOMAL PROTEIN L11-RELATED JGI ISS
PTHR11994:SF2Panther 50S RIBOSOMAL PROTEIN L5P JGI ISS
UniRef100_B9S8B5UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L11, putative n=1 Tax=Ricinus communis RepID=B9S8B5_RICCO SoyBaseE_val: 2.00E-35ISS
UniRef100_UPI000233EBFAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EBFA related cluster n=1 Tax=unknown RepID=UPI000233EBFA SoyBaseE_val: 4.00E-46ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g20810 not represented in the dataset

Glyma16g20810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g20810.1   sequence type=CDS   gene model=Glyma16g20810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTCAGAGAAGAAACTTTCAAACCCAATGAGGGAGATAAAGAGTGCAGATCGTCTCACCATAGCTGCTAAGGTGTTGGAACAGCTTAGTGGCCAAACCCTGTGTTTTCCAAAGAATAGTTGCGGGTTTATTGAAAGCATTATTAACAAGGTACACTGTTCTTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTCAGAGGTGACAAGGCGATGCAACTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGAGCATATCGATTTGGGAATCAA

>Glyma16g20810.1   sequence type=predicted peptide   gene model=Glyma16g20810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ASEKKLSNPMREIKSADRLTIAAKVLEQLSGQTLCFPKNSCGFIESIINKVHCSSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFRAYRFGNQ







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