SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35610 | AT | Annotation by Michelle Graham. TAIR10: xyloglucanase 113 | chr2:14947617-14951106 REVERSE LENGTH=644 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0052325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall pectin biosynthetic process | SoyBase | N/A | ISS |
| GO:0080147 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0052636 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: arabinosyltransferase activity | SoyBase | N/A | ISS |
| PTHR10994 | Panther | RETICULON/NOGO | JGI | ISS | |
| PTHR10994:SF5 | Panther | RETICULON3-A3 | JGI | ISS | |
| PF03407 | PFAM | Nucleotide-diphospho-sugar transferase | JGI | ISS | |
| UniRef100_B9S1R9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Reticulon3-A3, putative n=1 Tax=Ricinus communis RepID=B9S1R9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EBF9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EBF9 related cluster n=1 Tax=unknown RepID=UPI000233EBF9 | SoyBase | E_val: 0 | ISS |
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Glyma16g20730 not represented in the dataset |
Glyma16g20730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g109700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g20730.1 sequence type=CDS gene model=Glyma16g20730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTGGAGAAAAGGGTGTGAGGAAGTGGCTAATTCGAAGCCTCTGTTCCTCACGATCTACACTGTTGTCATCATTGGAATCGTGGTTTCCTCCTTCTTCGTCTTCTCTGCTATATACTCAACCAACCCTCCTTCTGCTCAATCTTCTGCATGGCTCTCTTCCATTTCGAGTGATGAAACTCGTGTTACAGATCAGACACTAAAGGTTTCTCGGTCAGCAGCGGTGCTTATTGTGCCCACTCCTTCCCCAGGATCACAAAATGAATGGCCAACGTCTATATGGGATGATCCACCACCCAATAAAAAGATGCCACCTTTGGAGGATTTCAGGCTGACCAAGAAACTGGTTCAGCAAAGGGTGAAGGATAATGCTGTAATAGTGACCTTTGGTAACTATGCATTCATGGATTTTATTCTGACGTGGGTTAAACAATTGAGAGATCTGGGGGTTTCTAATTTCCTTGTTGGTGCAATGGATACCAAATTAGTGGAGGCACTCTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTAGATGTTGGCTGGGGGTCTCCGACATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGAACCCACTTCCGTATCTTGCTCGTTATCCAGAAGCAGATGTTTTAACTTCAAGTGATCAAGTTATACCAACGGTTGTTGATGATAGTTTGGAAAATTGGCCTGAAGTTAGTGGCGCATACAACATAGGAATTTTCCATTGGAGACCTACAGAGTCTGCAAAAAAATTGGCAAAGCAATGGAAAGAAATGCTCCTAGCTGATGACCAGATATGGGATCAGAATGGGTTTAATGATATTGTTCACAGACAGTTAGGTCCTTCTGTTGATGATGAAAGTGGGCTTGTTTTTGCTTTTGATGGAAAACTGAAGCTGGGGATTTTGCCTGCAAGTATCTTCTGTAGTGGACATACATATTTCGTCCAGGCTATGTACCAGCAACTAAGGTTGGAGCCATATGCAGTGCACACAACATTTCAATATGGAGGCACTGAAGGAAAGCGCCATCGATTGCGAGAAGCCATGCTGTTCCTTGATCCACCAGAATACTATAATCCTCCGGGGGGTTTCTTGTCATTTAAGCCACATATTCCAAAAAACTTGTTGCTAAGTGGGGAGCATAATGTTGAATCACATTTTACTCTTGTTAATTATCAAATTAAACAGATTAGGGCAGCACTTGCAATTGCTTCCCTTTTGGACAGAACGCTGGTTATGCCTCCACTATGGTGCAGGATTGATAGGCTATGGTATGCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCATGTATTTGAGGTGAATGTCATGTTGAAAAAGCTCCCTGAAGAAGAGTTTGGTCCTCAAATAGATTTTCGAGAGTACTCAATACTTGATAATCCCTCTCTGCCGTCAGAGGTAAAAAAGTCATGGCTTGATGTTCAGCTCTGTAAAGAAGGAACCCAAGATTGTGATGCATCAGCATCAAATGATACCAATGTTGGAGGAGGAGTACTTAAATTTCCTAAGCACAGCAATGAAGAAACGTTTATGAAAGTATTCTCATCATTCAAGGATGTAAAAGTTATCAAGTTCTCTTCAGTGCAAGAGGCATTCACAGGTTTCACTGACAAGGAAAGGGAAGATAAATTCAGAAACCGTGTTAAGCGGTATGTGGGCATATGGTGTTGTGTGCCGGATCACACTCCTGGTCACATATATTATGATATGTACTGGGATGAGAAACCAGGATGGAAAGCAGTTCCTCCTCAAACTTCTGAGGATGATCATCCACCTTATTGA
>Glyma16g20730.1 sequence type=predicted peptide gene model=Glyma16g20730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAWRKGCEEVANSKPLFLTIYTVVIIGIVVSSFFVFSAIYSTNPPSAQSSAWLSSISSDETRVTDQTLKVSRSAAVLIVPTPSPGSQNEWPTSIWDDPPPNKKMPPLEDFRLTKKLVQQRVKDNAVIVTFGNYAFMDFILTWVKQLRDLGVSNFLVGAMDTKLVEALYWKGIPVFDMGSHMSTVDVGWGSPTFHKMGREKVILIDSILPFGFELLMCDTDMVWLKNPLPYLARYPEADVLTSSDQVIPTVVDDSLENWPEVSGAYNIGIFHWRPTESAKKLAKQWKEMLLADDQIWDQNGFNDIVHRQLGPSVDDESGLVFAFDGKLKLGILPASIFCSGHTYFVQAMYQQLRLEPYAVHTTFQYGGTEGKRHRLREAMLFLDPPEYYNPPGGFLSFKPHIPKNLLLSGEHNVESHFTLVNYQIKQIRAALAIASLLDRTLVMPPLWCRIDRLWYAHPGILEGSMTRQPFLCPLDHVFEVNVMLKKLPEEEFGPQIDFREYSILDNPSLPSEVKKSWLDVQLCKEGTQDCDASASNDTNVGGGVLKFPKHSNEETFMKVFSSFKDVKVIKFSSVQEAFTGFTDKEREDKFRNRVKRYVGIWCCVPDHTPGHIYYDMYWDEKPGWKAVPPQTSEDDHPPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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