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A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G11260 | AT | Annotation by Michelle Graham. TAIR10: sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522 | SoyBase | E_val: 0 | ISS |
GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
GO:0015749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: monosaccharide transport | SoyBase | N/A | ISS |
GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
GO:0015145 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monosaccharide transmembrane transporter activity | SoyBase | N/A | ISS |
KOG0254 | KOG | Predicted transporter (major facilitator superfamily) | JGI | ISS | |
PTHR24063 | Panther | FAMILY NOT NAMED | JGI | ISS | |
PTHR24063:SF116 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF00083 | PFAM | Sugar (and other) transporter | JGI | ISS | |
UniRef100_G7IWC2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hexose transporter n=1 Tax=Medicago truncatula RepID=G7IWC2_MEDTR | SoyBase | E_val: 0 | ISS |
UniRef100_UPI000233EBF3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EBF3 related cluster n=1 Tax=unknown RepID=UPI000233EBF3 | SoyBase | E_val: 0 | ISS |
Glyma16g20230 not represented in the dataset |
Glyma16g20230 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.16g109100 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g20230.2 sequence type=transcript gene model=Glyma16g20230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATATATCTTCTTTCTTCTCTTTCAGGTTATTGTAATCTCATCATAATTTACTTTTGCCAAAAAATACAGACCTAGACCAAAGGTCTAGCAATGGCGTCAGGACACATGGAAGCTCTGGTTGGGTATCCGGGCAAGCTCACCCTTAGGGTGGTCCTAACATGTGTCATGGCAGCCACTGGTGGATTAATTTTTGGTTATGATCATGGGGTTTCAGTCTGTTTGATGACATTTCCAATACGGGATTTTGATTGCCATTATTCCTCTTAAATTGGTGGAGTTACCTCCATGGATTCTTTCTTGAAGGAATTCTTTCCTTCTGTCTATGAACAAGAGTCTACCATGAAAGCTTCAACAGATAGTTACTGCAAATTCAACAGTCAGATATTGACTTTATTCACTTCATCTTTGTATCTAACTGCTCTTGTGGCTGGTCTAGTGGCATCCAGCATAACACGATTGATGGGGAGGCGTGCAACTATGATTATAGGTGGCATATTCTTTGTGTTAGGTGCATTACTCAATGGATTAGCTACAGGTTTATGGATGCTTATTGTTGGGAGAATGTTGCTTGGTTTTGGTATTGGATGTGCCAATCAGTCGGTACCAATCTATGTCTCAGAGATGGCCCCTTATAAGTACAGAGGAGGTCTCAACATATGCTTCCAATTATCAATCACCATAGGCATCTTCATAGCCAATCTCTTCAACTACTACTTTGCCCATATACTTGATGGCCAAGGATGGCGCTTAAGTTTAGGGCTTGGGGCAGTCCCTGCTGTCATTTTTGTTGTAGGCTCAATTTGTCTTCCTGACTCGCCGAACTCCCTCGTTGAGCGTGACCGTCTTGAGGAAGCAAGGAAAGAACTCCAAAAACTCCGTGGTACCACTGAAGTTGATGCCGAGTTAAATGATATAGTTGCTGCTAGTGAGGCCTCCAAAAAGGTGGCACACCCTTGGAGAACCTTGAGGGAAAGGAAGTATAGGCCTCAACTAATTTTTGCTATATGCATACCCTTCTTCCAGCAATTCACTGGCCTAAATGTCATCACATTCTATGCTCCTATACTATTCAGATCAATTGGCTTTGGAAGCACGGCTTCTCTCATGTCTGCGGTTATCATTGGCTCCTTTAAACCAATTTCAACCCTTATTTCAATTCTTGTTGTAGATAAATTTGGAAGGCGTAGCCTTTTCCTTGAGGGCGGTGCTCAAATGTTGATTTGTCAGATTACTATGGCAATAGCAATTGCTGTTGCATTTGGCACTAGTGGGAACCCTGGGACGTTGCCAAAGTGGTATGCAAGTGTAGTTGTTGGTGTCATATGTGTATATGTTTCTGGTTATGCTTGGTCTTGGGGTCCACTTGGATGGTTGGTACCAAGTGAAATTTTTCCTCTGGAGATTCGACCTGCAGCTCAAAGTGTCACTGTTTGTGTCAACATGATCAGCACTTTTATTGTAGCACAATTCTTCACCACAATGCTTTGTCACATGAAGTTTGGCTTGTTCATCTTCTTTGGTTGTTTTGTGGTGATAATGACCATATTTATCTACAAATTATTACCTGAAACAAAGGGTATCCCAATTGAAGAAATGACTATGGTGTGGCAGAAACACCCCATCTGGAGCAAATTTTTGGATTCTAACAAAAGTGTTCAAATCAGCAACCAAGATTCCAAATGTTGATTCAATGAGTGTCTCCAAAATAAAAAATTTATTGGCCTACATTTACAAGTGGATAATACAACCTACATGTGACTAATTTGATTTCGTATATTCAACCGATAATACATGTATATTGCATGCTTAAAAAATGTTATCTAGATTGTTTAATTTGTGGGTTATCACTACTATAAAAGTGTTGACGAACGACAACGAATATGTAAAAAATCGTCTTAAAAAATGTGTCTCTTTTAAGACAATTCTTAGTAAAGAACCGTCTTAGAATGTGG
>Glyma16g20230.1 sequence type=CDS gene model=Glyma16g20230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCAGGACACATGGAAGCTCTGGTTGGGTATCCGGGCAAGCTCACCCTTAGGGTGGTCCTAACATGTGTCATGGCAGCCACTGGTGGATTAATTTTTGGTTATGATCATGGGGTTTCAGGTGGAGTTACCTCCATGGATTCTTTCTTGAAGGAATTCTTTCCTTCTGTCTATGAACAAGAGTCTACCATGAAAGCTTCAACAGATAGTTACTGCAAATTCAACAGTCAGATATTGACTTTATTCACTTCATCTTTGTATCTAACTGCTCTTGTGGCTGGTCTAGTGGCATCCAGCATAACACGATTGATGGGGAGGCGTGCAACTATGATTATAGGTGGCATATTCTTTGTGTTAGGTGCATTACTCAATGGATTAGCTACAGGTTTATGGATGCTTATTGTTGGGAGAATGTTGCTTGGTTTTGGTATTGGATGTGCCAATCAGTCGGTACCAATCTATGTCTCAGAGATGGCCCCTTATAAGTACAGAGGAGGTCTCAACATATGCTTCCAATTATCAATCACCATAGGCATCTTCATAGCCAATCTCTTCAACTACTACTTTGCCCATATACTTGATGGCCAAGGATGGCGCTTAAGTTTAGGGCTTGGGGCAGTCCCTGCTGTCATTTTTGTTGTAGGCTCAATTTGTCTTCCTGACTCGCCGAACTCCCTCGTTGAGCGTGACCGTCTTGAGGAAGCAAGGAAAGAACTCCAAAAACTCCGTGGTACCACTGAAGTTGATGCCGAGTTAAATGATATAGTTGCTGCTAGTGAGGCCTCCAAAAAGGTGGCACACCCTTGGAGAACCTTGAGGGAAAGGAAGTATAGGCCTCAACTAATTTTTGCTATATGCATACCCTTCTTCCAGCAATTCACTGGCCTAAATGTCATCACATTCTATGCTCCTATACTATTCAGATCAATTGGCTTTGGAAGCACGGCTTCTCTCATGTCTGCGGTTATCATTGGCTCCTTTAAACCAATTTCAACCCTTATTTCAATTCTTGTTGTAGATAAATTTGGAAGGCGTAGCCTTTTCCTTGAGGGCGGTGCTCAAATGTTGATTTGTCAGATTACTATGGCAATAGCAATTGCTGTTGCATTTGGCACTAGTGGGAACCCTGGGACGTTGCCAAAGTGGTATGCAAGTGTAGTTGTTGGTGTCATATGTGTATATGTTTCTGGTTATGCTTGGTCTTGGGGTCCACTTGGATGGTTGGTACCAAGTGAAATTTTTCCTCTGGAGATTCGACCTGCAGCTCAAAGTGTCACTGTTTGTGTCAACATGATCAGCACTTTTATTGTAGCACAATTCTTCACCACAATGCTTTGTCACATGAAGTTTGGCTTGTTCATCTTCTTTGGTTGTTTTGTGGTGATAATGACCATATTTATCTACAAATTATTACCTGAAACAAAGGGTATCCCAATTGAAGAAATGACTATGGTGTGGCAGAAACACCCCATCTGGAGCAAATTTTTGGATTCTAACAAAAGTGTTCAAATCAGCAACCAAGATTCCAAATGTTGA >Glyma16g20230.2 sequence type=CDS gene model=Glyma16g20230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTTTCTTGAAGGAATTCTTTCCTTCTGTCTATGAACAAGAGTCTACCATGAAAGCTTCAACAGATAGTTACTGCAAATTCAACAGTCAGATATTGACTTTATTCACTTCATCTTTGTATCTAACTGCTCTTGTGGCTGGTCTAGTGGCATCCAGCATAACACGATTGATGGGGAGGCGTGCAACTATGATTATAGGTGGCATATTCTTTGTGTTAGGTGCATTACTCAATGGATTAGCTACAGGTTTATGGATGCTTATTGTTGGGAGAATGTTGCTTGGTTTTGGTATTGGATGTGCCAATCAGTCGGTACCAATCTATGTCTCAGAGATGGCCCCTTATAAGTACAGAGGAGGTCTCAACATATGCTTCCAATTATCAATCACCATAGGCATCTTCATAGCCAATCTCTTCAACTACTACTTTGCCCATATACTTGATGGCCAAGGATGGCGCTTAAGTTTAGGGCTTGGGGCAGTCCCTGCTGTCATTTTTGTTGTAGGCTCAATTTGTCTTCCTGACTCGCCGAACTCCCTCGTTGAGCGTGACCGTCTTGAGGAAGCAAGGAAAGAACTCCAAAAACTCCGTGGTACCACTGAAGTTGATGCCGAGTTAAATGATATAGTTGCTGCTAGTGAGGCCTCCAAAAAGGTGGCACACCCTTGGAGAACCTTGAGGGAAAGGAAGTATAGGCCTCAACTAATTTTTGCTATATGCATACCCTTCTTCCAGCAATTCACTGGCCTAAATGTCATCACATTCTATGCTCCTATACTATTCAGATCAATTGGCTTTGGAAGCACGGCTTCTCTCATGTCTGCGGTTATCATTGGCTCCTTTAAACCAATTTCAACCCTTATTTCAATTCTTGTTGTAGATAAATTTGGAAGGCGTAGCCTTTTCCTTGAGGGCGGTGCTCAAATGTTGATTTGTCAGATTACTATGGCAATAGCAATTGCTGTTGCATTTGGCACTAGTGGGAACCCTGGGACGTTGCCAAAGTGGTATGCAAGTGTAGTTGTTGGTGTCATATGTGTATATGTTTCTGGTTATGCTTGGTCTTGGGGTCCACTTGGATGGTTGGTACCAAGTGAAATTTTTCCTCTGGAGATTCGACCTGCAGCTCAAAGTGTCACTGTTTGTGTCAACATGATCAGCACTTTTATTGTAGCACAATTCTTCACCACAATGCTTTGTCACATGAAGTTTGGCTTGTTCATCTTCTTTGGTTGTTTTGTGGTGATAATGACCATATTTATCTACAAATTATTACCTGAAACAAAGGGTATCCCAATTGAAGAAATGACTATGGTGTGGCAGAAACACCCCATCTGGAGCAAATTTTTGGATTCTAACAAAAGTGTTCAAATCAGCAACCAAGATTCCAAATGTTGA
>Glyma16g20230.1 sequence type=predicted peptide gene model=Glyma16g20230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASGHMEALVGYPGKLTLRVVLTCVMAATGGLIFGYDHGVSGGVTSMDSFLKEFFPSVYEQESTMKASTDSYCKFNSQILTLFTSSLYLTALVAGLVASSITRLMGRRATMIIGGIFFVLGALLNGLATGLWMLIVGRMLLGFGIGCANQSVPIYVSEMAPYKYRGGLNICFQLSITIGIFIANLFNYYFAHILDGQGWRLSLGLGAVPAVIFVVGSICLPDSPNSLVERDRLEEARKELQKLRGTTEVDAELNDIVAASEASKKVAHPWRTLRERKYRPQLIFAICIPFFQQFTGLNVITFYAPILFRSIGFGSTASLMSAVIIGSFKPISTLISILVVDKFGRRSLFLEGGAQMLICQITMAIAIAVAFGTSGNPGTLPKWYASVVVGVICVYVSGYAWSWGPLGWLVPSEIFPLEIRPAAQSVTVCVNMISTFIVAQFFTTMLCHMKFGLFIFFGCFVVIMTIFIYKLLPETKGIPIEEMTMVWQKHPIWSKFLDSNKSVQISNQDSKC* >Glyma16g20230.2 sequence type=predicted peptide gene model=Glyma16g20230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSFLKEFFPSVYEQESTMKASTDSYCKFNSQILTLFTSSLYLTALVAGLVASSITRLMGRRATMIIGGIFFVLGALLNGLATGLWMLIVGRMLLGFGIGCANQSVPIYVSEMAPYKYRGGLNICFQLSITIGIFIANLFNYYFAHILDGQGWRLSLGLGAVPAVIFVVGSICLPDSPNSLVERDRLEEARKELQKLRGTTEVDAELNDIVAASEASKKVAHPWRTLRERKYRPQLIFAICIPFFQQFTGLNVITFYAPILFRSIGFGSTASLMSAVIIGSFKPISTLISILVVDKFGRRSLFLEGGAQMLICQITMAIAIAVAFGTSGNPGTLPKWYASVVVGVICVYVSGYAWSWGPLGWLVPSEIFPLEIRPAAQSVTVCVNMISTFIVAQFFTTMLCHMKFGLFIFFGCFVVIMTIFIYKLLPETKGIPIEEMTMVWQKHPIWSKFLDSNKSVQISNQDSKC*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||