Glyma16g20030 - SoyBase

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Report for Sequence Feature Glyma16g20030

Feature Type:	gene_model
Chromosome:	Gm16
Start:	22599301
stop:	22605953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g20030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20310	AT	Annotation by Michelle Graham. TAIR10: Peptidase M50 family protein \| chr4:10961639-10963283 FORWARD LENGTH=393	SoyBase	E_val: 5.00E-51	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
PTHR13325	Panther	PROTEASE M50 MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE 2 PROTEASE	JGI		ISS
PF02163	PFAM	Peptidase family M50	JGI		ISS
UniRef100_C6TIY7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIY7_SOYBN	SoyBase	E_val: 3.00E-144	ISS
UniRef100_G7L723	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane-bound transcription factor site-2 protease n=1 Tax=Medicago truncatula RepID=G7L723_MEDTR	SoyBase	E_val: 1.00E-74	ISS

Expression Patterns of Glyma16g20030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g20030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma16g20030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g20030

Limit To All Plant Sequences

>Glyma16g20030.1   sequence type=CDS   gene model=Glyma16g20030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTCGAAGCTAGGCGAATCAGGAGGTTTGTGCCTCAGAGGCCCTCACACCGCACTATTCTCCCGCTTCACGCTTCTTCCTCCTCCCACAATGTTTCCAACACCATTTCCTGCTGGTATTGCGACTACAAAATCTGCTCGTTTAATAGACCTCTTTTCCACTTTGGTCGCCGATACGCCAGGTTTTTGAAAGTGTGGTTTTCGATTGGGGTTGGGTTTGCCCTCTCTGCTGTACTCGGAGTCACTTTGGTTCTCCTTTGGGAACTAGCCAGAACATTGCATCTCTGTGCCGGCAGCAATAAGCTTGGAAGCTTTGCTAGATCCTTGCTATTTGGCATCCCTCCTTCAGTCCCTGGTTTAAGTTTATCGCTTGCTGATACTGGGTATGCATGTGTTTCTACCATCATATCTGTCTTCATGCATGAATTGGGTCATGCAGTTGCTGCCACAAGTGAGGGAATACAAGTAGAGTACATTGCCGTCTTCATTGCGATTCTATTTCCTGGTGCTCTGGTTGCCTTCAATTATGAATTTTTGCAGACTTTGCCTCATTTGACTGCCCTGCGTGTGTATTCTGCTGGCATTTGGCACAATGCAGTTGTAAGTTGA

Predicted protein sequences of Glyma16g20030

Limit To All Plant Sequences

>Glyma16g20030.1   sequence type=predicted peptide   gene model=Glyma16g20030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVEARRIRRFVPQRPSHRTILPLHASSSSHNVSNTISCWYCDYKICSFNRPLFHFGRRYARFLKVWFSIGVGFALSAVLGVTLVLLWELARTLHLCAGSNKLGSFARSLLFGIPPSVPGLSLSLADTGYACVSTIISVFMHELGHAVAATSEGIQVEYIAVFIAILFPGALVAFNYEFLQTLPHLTALRVYSAGIWHNAVVS*

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