SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20310 | AT | Annotation by Michelle Graham. TAIR10: Peptidase M50 family protein | chr4:10962251-10963690 FORWARD LENGTH=374 | SoyBase | E_val: 7.00E-89 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| PF02163 | PFAM | Peptidase family M50 | JGI | ISS | |
| UniRef100_G7L723 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane-bound transcription factor site-2 protease n=1 Tax=Medicago truncatula RepID=G7L723_MEDTR | SoyBase | E_val: 3.00E-159 | ISS |
| UniRef100_I3SSW9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Medicago truncatula RepID=I3SSW9_MEDTR | SoyBase | E_val: 2.00E-159 | ISS |
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Glyma16g19876 not represented in the dataset |
Glyma16g19876 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g19876.1 sequence type=CDS gene model=Glyma16g19876 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCGGAATGGCATTATTCCTCTTGCCCATGATCTTGTTTCCCTTTTACAGCAGTGATAGTAGTCCCATGGTTTTGAATGTACCCCCAACCTCACCTTTGTTCGGTTATTTAGCTCCTGGTGATGTTATTCTGTCAGTAGATAATGTAACCATCAGAAATGCACAGGAATGGTTGAAGCTTAATACATTGACATATAACATTAAGCTTAATAATGTAAATGTTTCTCAGCGCTCCGGAAACTTGGGGGTTATCAACAGAATGAAAGGTTACTGTGTTCCCAGTTTTATGATGGATGAAAGCAAAATTACTGAATTGCTGGAAAATCAACATGCTTGTCCCAGTGAACTTACTGCCTTTGTAAAATCTTTATGCTCTGCTAATGTTACACTGGATGATGGTCAGAGCGAAACTGATCTTTTGAACAGAGGATGGAATATGTACTGCTTAAATGCTAAAGATGTTGTCAAACGCTATAGGTGTGGTGATGACTGGGGACTAGCTATAACCAAGGGAGGTGGCTGTACGTGCTCTCAGGATGAATTTTGTTTAGCTCCAGTTCAGGAGCCTGGATCGGTATGGGTTGAGATTGCATATTCAAGGACTTCTCATGAATGTTTGTCACATGTACAAAACAGATTTCCATTTTCTGAAACTTCTGGTGTTAAGGAAACTAATTGTGGTGGTACTTTTATTTTTGTTGGCGATGTCATCTCTATGGCACATTCGATTCAGCTAACATCATATCAGCCTCGCTGGGGACCACAAATTGTTGCATATTTTCCAAATTTACTGGAAAGGATTTTAATATGGACATTTCATGTCTCTCTGGCTCTGGCTCTTCTCAATGGTTTGCCTGTCTATTTTCTGGATGGTGAATCTATTTTAGATGCAACTTTATCCCACTTTACTTCGTTAAGCCCAGGGAAGAGGAAGAAGGTTCTTAGACTATGCCTTCTTGGTGGGTCAGTTATTTCTATTATTGTCTGTTTCCGGGAACTCCTTTAG
>Glyma16g19876.1 sequence type=predicted peptide gene model=Glyma16g19876 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGMALFLLPMILFPFYSSDSSPMVLNVPPTSPLFGYLAPGDVILSVDNVTIRNAQEWLKLNTLTYNIKLNNVNVSQRSGNLGVINRMKGYCVPSFMMDESKITELLENQHACPSELTAFVKSLCSANVTLDDGQSETDLLNRGWNMYCLNAKDVVKRYRCGDDWGLAITKGGGCTCSQDEFCLAPVQEPGSVWVEIAYSRTSHECLSHVQNRFPFSETSGVKETNCGGTFIFVGDVISMAHSIQLTSYQPRWGPQIVAYFPNLLERILIWTFHVSLALALLNGLPVYFLDGESILDATLSHFTSLSPGKRKKVLRLCLLGGSVISIIVCFRELL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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