Glyma16g19790 - SoyBase

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Report for Sequence Feature Glyma16g19790

Feature Type:	gene_model
Chromosome:	Gm16
Start:	22049797
stop:	22052766
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g19790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37990	AT	Annotation by Michelle Graham. TAIR10: elicitor-activated gene 3-2 \| chr4:17855964-17857388 FORWARD LENGTH=359	SoyBase	E_val: 1.00E-107	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0045551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cinnamyl-alcohol dehydrogenase activity	SoyBase	N/A	ISS
GO:0047681	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aryl-alcohol dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
KOG0023	KOG	Alcohol dehydrogenase, class V	JGI		ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF285	Panther	QUINONE OXIDOREDUCTASE-RELATED	JGI		ISS
PF00107	PFAM	Zinc-binding dehydrogenase	JGI		ISS
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI		ISS
UniRef100_G7KGJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cinnamyl alcohol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KGJ2_MEDTR	SoyBase	E_val: 5.00E-137	ISS
UniRef100_UPI000233EBEE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EBEE related cluster n=1 Tax=unknown RepID=UPI000233EBEE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g19790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g19790 not represented in the dataset	Glyma16g19790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g19790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g096300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g19790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g19790

Limit To All Plant Sequences

>Glyma16g19790.2   sequence type=CDS   gene model=Glyma16g19790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGTTCTACCCTTCGTCTCTAACAGATTTCCATCAGCAATTTCAGCATATAAACATCACAAACATCATCACAAAAACCCTAAAACAGAATGGTGTGAGAAATGGTGCAGGCACGAGGTAGCTGGTGTAGTGACAGAGGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAGGTTGGTGTGGGATGCTTGGTTGATTCCTGTCGCACCTACCAGAACTATGATGACAATCTTGAGAATTATTGTCCTCAATATACGCTCACATATGGTGCCAAATATAGAGATGGCACCATCACATACGGAGGCTACTCTAACTCAATGGTTGCAGATGAGCATTTTGTGATTCGCATTCCTGATAGCTTAGCACTTGATGCTACTGCACCTCTTATTTGTGCTGGCATCACTGTGTATAGCCCTCTCAGATATTATGGACTTGACAAGCCTGACCTACATGTTGGTGTGGTTGGTCTCAGTGGACTAGGTCACATGGCTGTCAAGTTTGCCAAAGCTTTTGGAGCTAAGGTCATAGTAATAAGTACATCACCTAGTAAAAAGGATGAAGCAATACAACATCTTGGAGCTGATTCCTTTCTACTAAACCGTGACCAAGATCAGATGCAGGGTACAATGGGTGCTTTGGATGGTATTATTGACACAGTTTCTGCGGTTCATCCTCTCTTACCTCTCATTGGTTTGCTCAAGTCTCATGGAAAGATTGTAATGGTGGATGCACCAGAGAGGCCTCTAGAACTACCAGTCTTTCCTTTACTTGCTGCGAAACACAATGTCAAACCTGACATTGAAGTCATTCCTATGGACTATGTCAACACAGCAATGGAACGACTCCTTAAAGAAGATGTTAAATATCGATTTGTTATTGACATTGGAAACACACTGAAAGTCTGA

Predicted protein sequences of Glyma16g19790

Limit To All Plant Sequences

>Glyma16g19790.2   sequence type=predicted peptide   gene model=Glyma16g19790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LVLPFVSNRFPSAISAYKHHKHHHKNPKTEWCEKWCRHEVAGVVTEVGSKVEKFKVGDKVGVGCLVDSCRTYQNYDDNLENYCPQYTLTYGAKYRDGTITYGGYSNSMVADEHFVIRIPDSLALDATAPLICAGITVYSPLRYYGLDKPDLHVGVVGLSGLGHMAVKFAKAFGAKVIVISTSPSKKDEAIQHLGADSFLLNRDQDQMQGTMGALDGIIDTVSAVHPLLPLIGLLKSHGKIVMVDAPERPLELPVFPLLAAKHNVKPDIEVIPMDYVNTAMERLLKEDVKYRFVIDIGNTLKV*

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