SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G30820 | AT | Annotation by Michelle Graham. TAIR10: CTP synthase family protein | chr1:10945251-10948825 REVERSE LENGTH=600 | SoyBase | E_val: 0 | ISS |
| GO:0006221 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003883 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: CTP synthase activity | SoyBase | N/A | ISS |
| KOG2387 | KOG | CTP synthase (UTP-ammonia lyase) | JGI | ISS | |
| PTHR11550 | Panther | CTP SYNTHASE | JGI | ISS | |
| PF00117 | PFAM | Glutamine amidotransferase class-I | JGI | ISS | |
| PF06418 | PFAM | CTP synthase N-terminus | JGI | ISS | |
| UniRef100_G7LJD6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CTP synthase like protein n=1 Tax=Medicago truncatula RepID=G7LJD6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MMQ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMQ9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g19580 not represented in the dataset |
Glyma16g19580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g096500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g19580.1 sequence type=CDS gene model=Glyma16g19580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTACGTGCTGGTGACTGGTGGAGTTGTTAGTGGCCTTGGCAAAGGTGTTACTGCCAGCAGTATTGGTTTGCTTCTCAAAGCTTGTGGACTTAGAGTCACTGCCATTAAAATTGATCCTTACTTAAACACAGATGCGGGAACAATGTCCCCCTTTGAGCATGGAGAAGTGTTTGTGTTGGATGATGGTGGTGAGGTGGACCTGGATCTTGGAAACTATGAGCGTTTTATAGACATCAAGTTGACCCGTGATAACAACATAACTACTGGGAAGATTTACCAGTCTGTCATTGACAAAGAAAGAAAAGGAGACTATTTAGGAAAAACTGTTCAGGTCGTGCCTCATATCACTGATGCTATTCAAGATTGGATTGAAAGAGTGGCCCACATACCGGTAGATGGAATGATCGGTCCAGCTGATGTATGTGTCGTAGAATTGGGTGGAACCATAGGAGATATTGAGTCCATGCCATTTATTCAGGCATTAGGACAATTCTCATACAGAGTAGGTGCTGGCAACTTTTGCTTAGTTCATGTCAGCCTTGTTCCTGTTTTGAATGTTGTTGGTGAACAGAAAACAAAAGCAACCCAGCATAGTGTTCGTGCACTGCGTGGCCAAGGGCTGACTCCACATATCTTAGCATGCCGTAGCACTATGGTACTGGATGAGAATGCAAAGGGAAAACTCTCTCAATTTTGCCTAATTCCGGCAGAAAATATTGTTACTCTTTATGATGTTCCCAACATCTGGCACATTCCTTTGCTTTTAAGAGATCAGAAGGCTCACGAAGCAATGTTTAAAGTGCTGAACCTTCATGGTGTAGCTAAAGAGCCCAATTTAGAGGAATGGACTTGCAGAGCTGAATCTAGTGATTTGCTTTATGAACCAGTTCGTATAGCCTTAGTAGGGAAATATACGTGCCTTTCAGATTCCTACCTCTCCATTCTAAAGGCCTTACTGCATGCTTCTGTTGATTGCCAAAAGAAACTTGTTGTGGACTGGATTCCAGCTAGCAATCTTGAAACTGCAACTGCAAAAGGGAATCATGATGCTTATAAGGCTGCTTGGAAGTTATTGAAGGGTGCTGATGGTGTTCTTGTTCCTGGAGGGTTTGGGGATAGAGGAGTGCAAGGAAAAATTATTGCAGCTAAATATGCCCGCGAAAACAGGATTCCATTCCTTGGTATTTGTCTTGGAATGCAGATTGCTGTCATAGAGTTTGCTCGATCTGTTCTTGGTGTACAAGATGCTAACAGCACTGAATTTGAGCCCCATACCAAAAGCCCATACATCATATTTATGCCTGAGGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGGTGAATCCGGATTTAGTAGCCTGCCTTGAAAATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGGGTTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTTCAATTGTTGATAACAGTCTCTCAAAAGGAGTAGATATCTCTCCAGTGAAAACATACCGAACTAGAACCACGACAAAGACAGCTTATAGGACTGCTGAATATGTATATGGAAGTTGCAATGGATTGCATTTCTAA
>Glyma16g19580.1 sequence type=predicted peptide gene model=Glyma16g19580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFIDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDAIQDWIERVAHIPVDGMIGPADVCVVELGGTIGDIESMPFIQALGQFSYRVGAGNFCLVHVSLVPVLNVVGEQKTKATQHSVRALRGQGLTPHILACRSTMVLDENAKGKLSQFCLIPAENIVTLYDVPNIWHIPLLLRDQKAHEAMFKVLNLHGVAKEPNLEEWTCRAESSDLLYEPVRIALVGKYTCLSDSYLSILKALLHASVDCQKKLVVDWIPASNLETATAKGNHDAYKAAWKLLKGADGVLVPGGFGDRGVQGKIIAAKYARENRIPFLGICLGMQIAVIEFARSVLGVQDANSTEFEPHTKSPYIIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHRYEVNPDLVACLENAGLSFTGKDETGQRMEILELPNHPYFIGAQFHPEFKSRPGKPSPLFLGFIGAACGQLDAVLQRSSIVDNSLSKGVDISPVKTYRTRTTTKTAYRTAEYVYGSCNGLHF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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