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Report for Sequence Feature Glyma16g19560

Feature Type:gene_model
Chromosome:Gm16
Start:21643123
stop:21669755
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g19560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58140AT Annotation by Michelle Graham. TAIR10: phototropin 2 | chr5:23524771-23529993 FORWARD LENGTH=915 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009638GO-bp Annotation by Michelle Graham. GO Biological Process: phototropism SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010362GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of anion channel activity by blue light SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000155GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0009882GO-mf Annotation by Michelle Graham. GO Molecular Function: blue light photoreceptor activity SoyBaseN/AISS
GO:0010181GO-mf Annotation by Michelle Graham. GO Molecular Function: FMN binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
KOG0610 KOG Putative serine/threonine protein kinase JGI ISS
PTHR24354Panther SERINE/THREONINE-PROTEIN KINASE YPK-RELATED JGI ISS
PTHR24354:SF88Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00989PFAM PAS fold JGI ISS
PF08447PFAM PAS fold JGI ISS
UniRef100_Q5DW42UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phototropin n=1 Tax=Phaseolus vulgaris RepID=Q5DW42_PHAVU SoyBaseE_val: 0ISS
UniRef100_UPI000233B4B1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B4B1 related cluster n=1 Tax=unknown RepID=UPI000233B4B1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g19560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g19560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g096600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g19560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g19560
>Glyma16g19560.2   sequence type=CDS   gene model=Glyma16g19560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAACTGAAAGTGTCTGCTAAGAATGATCCTGCTGCCAGCAGTGATCAGGCAGACTCATTTCCAATATTCAAAATGCGAGACAGTCAGAATGTTGGACTGCAGAACAGTAGAAGAGTGGAAGATGATGCAAAAGCTGTAAGATTGGATGGAGGTTCTGTAATTGTTCCCTCTAATTCTGCAAACAGTAAGGAACCTATCAACAAGTGGATGGCATTTGCAAAGAAGCCTGGTTTCACAGTTGATGGCAACTCAGCAACAAAGGATAAAAGTACAAGCGAAGATAATTACTCGAGGAATCATCTAAACGAGAAGTCGTCTTCTATTGTAACCGAAGCAAACATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGGTGAACTCGAGGAATTTCAAAGCATTAGGGGGAGAGAATACAAGTGGCTCTTTTGATGGTGACAGAAGCAGAAACTTGTCAGATAGATTTGTTGAACCGACACGGACGTCAGGGGAGTCAAACTACGGATCTGAGTCATCATCAGGGGTGTTTCCAAGGGTGTCGCAAGAGTTGAAGGAAGCATTGGCGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGATTGCCCAATCATGTATGCCAGCAGTGGCTTTTTTACTATGACAGGCTATTCTTCAAAGGAGATTATTGGAAGGAACTGTCGATTTCTTCAGGGGCCTGAGACCGACAAGAATGAAGTGGCCAAAATTCGGGATGCAACTAGAAATGGAAGAAGTTATTGTGGCAGACTTTTAAACTACAAGAAAGATGGAACTCCATTCTGGAATCTTCTCACTATCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAAGTGAGCAAGTATACAGAAGGCGTGAATGAAAAGGCATTACGACCAAATGGATTACCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGAAAGCTTTGGGTTCTATCACTGAGGTTGTCCAAACCGTTAAAGACCCAAAATCAATTATTAATGATAGGAATGGTGATACTGCTGCCAAGCCTGAAGAACAAGAGAAGTTCAATTTTGATTTTGTTTTGCCAAAGTCTGCTGATATTGGGAATACAAACACACCTGGTAGACAAGCTTCTCCACTTTACATCCAACGCATGAGTTCTAGTCAGGATAAGAGCAGGACATCACAATCAGGACGGATTTCTTTCAAGGGTTTAAAAGGGAGATCTCTGAGTTCTGCAGAGGAGAAGTCCATAGTTGAACCTGAGGTTTTGATGACCAAGGAAATAGAGTGGTCTAACAATTTGGAGCATTCACTAAGAGAGAGGGACATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGAGGATAGAAAAGAACTTTGTGATTTCTGATCCTAGACTTCCTGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACGGAATATACACGAGAAGAAATTTTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGAGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGGAAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGGTGAAAGCCACAGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCGGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCCCAACCCGTCTTTCCACGACCTCACAAGAAGGAAAATCCTTCTTGGATAGCGATACAAAAGGTAGCTGCAAGAGGTGAAAAAATTGGCCTGCAACATTTTGTGCCCATAAGGCCGTTGGGTTGTGGAGACACTGGCAGTGTTCATTTGGTGGAACTCAAAGGTACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTGATGCTAAATCGTAATAAGGTTCACCGCTCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAGCGAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTACCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAGCTGATTTTGATCTATCATATATGACATCTTGTAAACCACAGGTTGTGAAGCAAGCGATACCTGGTAAAAGAAGATCACGAAGTGAACCACCACCAACATTTGTTGCAGAGCCAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTCTATGGTCGTACACCATTCAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAGTTGATTAATGCACTACTCCAAAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGACTCCACCCCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCCGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCTATTGATATGGATATTTTTTGA
Predicted protein sequences of Glyma16g19560
>Glyma16g19560.2   sequence type=predicted peptide   gene model=Glyma16g19560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKLKVSAKNDPAASSDQADSFPIFKMRDSQNVGLQNSRRVEDDAKAVRLDGGSVIVPSNSANSKEPINKWMAFAKKPGFTVDGNSATKDKSTSEDNYSRNHLNEKSSSIVTEANIAERTAEWGLVVNSRNFKALGGENTSGSFDGDRSRNLSDRFVEPTRTSGESNYGSESSSGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTITPIKDDHGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKDPKSIINDRNGDTAAKPEEQEKFNFDFVLPKSADIGNTNTPGRQASPLYIQRMSSSQDKSRTSQSGRISFKGLKGRSLSSAEEKSIVEPEVLMTKEIEWSNNLEHSLRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKENPSWIAIQKVAARGEKIGLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTPTHVCLITDFFPGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLADFDLSYMTSCKPQVVKQAIPGKRRSRSEPPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSGIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRIGSTTGANEIKQHPFFRGINWPLIRNMTPPPLDVPLKLIGNDPVAKDIKWEDDGVLVSSIDMDIF*






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