SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G08960 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:2730405-2736762 REVERSE LENGTH=1010 | SoyBase | E_val: 0 | ISS |
| GO:0000059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, docking | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG1993 | KOG | Nuclear transport receptor KAP120 (importin beta superfamily) | JGI | ISS | |
| PTHR10997 | Panther | IMPORTIN (RAN-BINDING PROTEIN) | JGI | ISS | |
| PTHR10997:SF7 | Panther | gb def: hypothetical protein [arabidopsis thaliana] | JGI | ISS | |
| PF03810 | PFAM | Importin-beta N-terminal domain | JGI | ISS | |
| UniRef100_G7KSA9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exportin-2 n=1 Tax=Medicago truncatula RepID=G7KSA9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338820 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338820 related cluster n=1 Tax=unknown RepID=UPI0002338820 | SoyBase | E_val: 0 | ISS |
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Glyma16g19490 not represented in the dataset |
Glyma16g19490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g18530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g097100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g19490.2 sequence type=CDS gene model=Glyma16g19490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTATCGGCTTCCGACGTTGCAGCCATGTACTCGCTGCTTTCGAATTCCATGAGTACCGATCACCGTCTCCGCGGTCCGGCGGAGGACGCGCTCGCCCAATCGGAGTCCAGGCCTGGCTTCTGCTCCTGCCTCCTCGAAGTGATTACCGCGAAGGATTTGGGGTCGCAGACGGATGTGCGCATGATGGCCACCGTGTATTTCAAGAACAGCGTCAACCGCTACTGGCGCCACCGCCGCAATTCCTCGCCAGACATCTTTTTGGTTTTATCACAACAAATTCAATCAGCAGATGTTCTTGCTTCCCATCGAATCTTTTTGATTCTATTTAGGACCTTAAAGGAGTTGTCCACAAAACGCCTTACATCAGACCAACGCAACTTTGCAGAGATATCATCCCATTTCTTTGATTATAGCTGGCGCCTTTGGCAAAGTGATATGCAGACAATACTGCATGGTTTCTCATCTCTTTCTCAAAGCTGTAATCTAAATGCTGAAGATCAGCCTCATGAACTTTATCTTACATGTGAGCGATGGCTGTTATGTTCGAAGATTGTTCGGCAATTAATTATTTCTGGATTTCAAAGTGATTCAAAGTGTTTTCAGGACTTTGTAAAGAGGGCATGTACCAAATTGATGAAAATTTTAGTTGCCTTTCAGGGTAGACATCCATACTCATTTGGTGATAAATTTGTTCTTTCATCGGTCTTGGACTTCTGTTTGAATAGGATAACAGATCCTGATCCATATCTGTTGTCATTTGAGCAATTTCTCATTCAGTGTATGGTGATGATTAAAAATATTCTGGAATGTAAGGAGTACAAGCCAAGTCTTACTGGTAGGGTGATGGACGAAAATGGAGTTACACTGGAGCTGATGAAGAAAAACATTTCCAGTGCGGTTGGTGGTGTTTTAACTTCCCTTCTTCCCACTGAACGGATAGTCCACTTGTGTAATGTGTTGATATCGAGGTATTTTGTTCTGACAGCAAGTGATTTGGAAGAGTGGTATCGTAACCCTGAGTCTTTTCACCATGAGCAGGATATGGTTCAGTGGACAGAAAAATTGAGGCCATGTGCTGAAGCTTTGTACATTGTATTATTTGAAACTAATAGCCAATTGCTAGGTCCTGTTGTGGTCTTTCTTCTTCAAGAGTCTATGAATAATTGTCCAACTTCAGTGGCGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGTTATCCATATTTCGATCTTGCCATTCCTAAAAATTGAAGATCGTTTAATTTTGTTGTGTCTGGACTTTGGTAACCCTAAGAAATCACAGCCACCCACTGGTAATGGAACTCTGTTTAATGGTGCTTTATCACTCGAACTCTCAAATGAACATCCAAATTTGCGTATCATTCATCGTAAAGTTGCTATAATTTTGGGGCAGTGGGTTTCTGAGATCAAAGATGATACAAAAAGGCCCGTATACTGTGCATTAATCAGATTGTTACAGGACAAAGATTTATCTGTCCGGCTGGCAGCATGTCGATCCCTATGCTTGCATATTGAAGATGCAAACTTTTCAGAGAGGGAGTATGTTGATCTTCTTCCTATTTGTTGGGATTCATGTTTTAAGTTGTTTGAGGATGTTCGGGAATTTGATTCAAAGGTTCAGATTTTGAATTTGATCTCTATCCTTATTGGACATGTTAGTGAAGTTATTCCATTTGCAAACAAGTTGGTGCAGTTTTTTCAGAAGGTCTGGGAGGAGTATTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCCCTGAGAAACTTTGTGGTTGCACTTGGTTACCAGTCACCCATTTGCTACAATATACTACTGCCAATTCTGGAGAATGGAATTGATATTAATAGTCCAGATGAACTGAATCTCCTAGAAGATAGCATGCTGTTATGGGAGGCCACACTTTCTCATGCTCCATCAATGGTGCCTCAATTGTTACAATATTTTTCACGCCTTGTGGAGATTATGGAAAGAAATTTTGACCATTTACAGGTTGCTATGAACATAATTGAAGATTACATAATTTTGGGTGGAAATGACTTTCTGAGCATGCATGCAACAAATATTGCTAAAATTCTTGATTTGGTTATTGGAAATGTCAATGACAAAGGCATTCTTTCAGTTCTTCCTGTGATTGATATCTTAATACAGTGTTTCCCCATGGAAGTGCTGCCACTTATTAGCAGTACTTTACAAAAGTTAATTGTAGGATGTTTGAGTGGAGGAGATGATCACAATCCTTCTAAAACATCTGTTAAAGCATCTTCTGCTGCCATCCTGGCTAGGCTTTTAGTGATGAATACAAATTCACTTGCCCAATTAGCATCAGATCCATCAACTTCTCAACTGCTTCAGACAGCATCCATCCCAGTTCAAGAAAATATACTTCTTTGTCTGGTTGACATTTGGGTTGACAAGGTAGATAACGTTTCTTCCATCCAGAAGAAGACAATTGGCTTAGCCCTCTCAATAATTCTGACATCAAGACTGCCTCAAGTACTTGACAAACTGGATCAAATTTTGAGTGTTTGCACTAGTGTAATTCTGGGCAGAAATGATGACTTAACCGAGGAAGAGTCCAGTGGTGACATGAGCTCCAGCACGTCTCCTGATGAGGGCACCATTCCTAGTAAAGAATTCAGAAAAAGACAGATCAAATTTTCAGACCGTATCAATCAGCTGTCTCTTGAGGACAGTGTGAGAAAATCTACAAAAATGTGCTTCTATTCATGGAGAATCATTTGA
>Glyma16g19490.2 sequence type=predicted peptide gene model=Glyma16g19490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSASDVAAMYSLLSNSMSTDHRLRGPAEDALAQSESRPGFCSCLLEVITAKDLGSQTDVRMMATVYFKNSVNRYWRHRRNSSPDIFLVLSQQIQSADVLASHRIFLILFRTLKELSTKRLTSDQRNFAEISSHFFDYSWRLWQSDMQTILHGFSSLSQSCNLNAEDQPHELYLTCERWLLCSKIVRQLIISGFQSDSKCFQDFVKRACTKLMKILVAFQGRHPYSFGDKFVLSSVLDFCLNRITDPDPYLLSFEQFLIQCMVMIKNILECKEYKPSLTGRVMDENGVTLELMKKNISSAVGGVLTSLLPTERIVHLCNVLISRYFVLTASDLEEWYRNPESFHHEQDMVQWTEKLRPCAEALYIVLFETNSQLLGPVVVFLLQESMNNCPTSVAEITPALLLKDAAYVIHISILPFLKIEDRLILLCLDFGNPKKSQPPTGNGTLFNGALSLELSNEHPNLRIIHRKVAIILGQWVSEIKDDTKRPVYCALIRLLQDKDLSVRLAACRSLCLHIEDANFSEREYVDLLPICWDSCFKLFEDVREFDSKVQILNLISILIGHVSEVIPFANKLVQFFQKVWEEYSGESLLQIQLLVALRNFVVALGYQSPICYNILLPILENGIDINSPDELNLLEDSMLLWEATLSHAPSMVPQLLQYFSRLVEIMERNFDHLQVAMNIIEDYIILGGNDFLSMHATNIAKILDLVIGNVNDKGILSVLPVIDILIQCFPMEVLPLISSTLQKLIVGCLSGGDDHNPSKTSVKASSAAILARLLVMNTNSLAQLASDPSTSQLLQTASIPVQENILLCLVDIWVDKVDNVSSIQKKTIGLALSIILTSRLPQVLDKLDQILSVCTSVILGRNDDLTEEESSGDMSSSTSPDEGTIPSKEFRKRQIKFSDRINQLSLEDSVRKSTKMCFYSWRII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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