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Report for Sequence Feature Glyma16g19435

Feature Type:gene_model
Chromosome:Gm16
Start:21358506
stop:21361025
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g19435
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01360AT Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) | chr5:148014-149316 REVERSE LENGTH=324 SoyBaseE_val: 2.00E-69ISS
GO:0009827GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0045489GO-bp Annotation by Michelle Graham. GO Biological Process: pectin biosynthetic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
PTHR13533Panther FAMILY NOT NAMED JGI ISS
PTHR13533:SF3Panther gb def: unknown protein [takifugu rubripes] JGI ISS
UniRef100_I1MMQ1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMQ1_SOYBN SoyBaseE_val: 3.00E-159ISS
UniRef100_Q10MX4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10MX4_ORYSJ SoyBaseE_val: 7.00E-39ISS

Expression Patterns of Glyma16g19435
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g19435 not represented in the dataset
Glyma16g19435 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g19435
ParalogEvidenceComments
Glyma07g18440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g19435 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma16g19435
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma16g19435
>Glyma16g19435.2   sequence type=transcript   gene model=Glyma16g19435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGGAGTCATAAGAGTGAGAGACAAAAACTTGACAAGAATAGTATATTTCCCACCAAATGAATATTCTACAGGGTCTACTTGATGATGCAGAAACTAGAAAACATGATGTATGGCTAAATGCATAGCTTCCTCTACCTGGCCAAATTGTATGAGGTGCCAAAGATGTTAGCCTTTCAACCCATTCCTTAACCTCCAGTATCTTTTTAGCATTTTTTAGTCATGCCAAGGTATACTATGCTTTAACTTCACTCCTACTCAAAAAATGCATAAAACCTCCCCCTCTAAACCTTTTGTACAATGTCATCATCATTCTGTTGTGTTGAGCACCACTTCATTAACTCTTTCTTCCCACCGTTAAGCTCCACTACTCATCCCCCATGATTCCTTCAGGAATAATGAAGTATCCCAGAGGAAAGCTTCCTCTTCCCATCATTGTCATCACAACATGTGTTCTTGTTTTTGTGGCTATCTTGTATGTAGAGAGGCTCAGTTTCCTCTCTTCCAAGTCCATTTTCAAGTTCAAACCATGTCCTAGAAAAACCACCAAAACAAAGTCTAGTGACAAAAAAGCAGATGAGGAGGTTGGGGTTGTGAATGCATCAACATGGATTGATGACAGGTTTGATTTTGACCCTGAGGAGTGCAATGTTGCAAATGGGAAATGGGTGTTTAACCATTCAATAAAGCCTCTCTACTCTGACATAAGCTGTCCATACATAGATAGACAATTTTCTTGTGTCAAGAATGGGAGGAATGATTCTGACTATCACCATTGGGAGTGGCAGCCAGAAGATTGCACCTTGCCACGTTTCAACCCAGAGCTAACCCTCAGAAAGCTTCAAGGGAAAAGGCTGCTATTTGTGGGGGATTCACTGCAAAGAAACCAATGGGAATCTTTTGTCTGCTTGGTAGAATGGGTCATACCTCATAAGCATAAATCTATGCAACTAGGAAGAGTTCATTCAGTCTTCACAGCCAAGGTATTGATACATGCGTTGAATATATTATGGTCAAAGATGTTGACTCAACTCAATCAGCTCTTAAAAACAATACTTAGATGCAGTTTTCGATGTTGTTTTCCAATTAAAATTAGAATTTTACCTCGGTGATCTGATTGGAAAACAATAACAAAAGCACATGAAATTGCATAAGTTTCTAACTTTGAAGTTATGCTCTTGGTTGGTAATTGGTATTGCAGCATATTGGTGGCGAATGTTTGGGTCACAAACTCCAAATTTGCAAAAGCTAGCTATTAAAATTTTGAGTTTGACTTGCAATGCTTCAGGATGTGAAAGAAATTGGAGTGAGTTTGAGCAAGTAATTGTGACAAAACTCTAACTATACTTTCTAATTTTATTTAATTTTGATGATCATGTTTTTGTTCATGTTATTGCCTTCACTAACTTGACTAGATGAAGAAGATGGGGCTTTATTGGCCATTGGATATTCTTCAATACGTAGGACTTGAGTGGGGATATGTTGAGATTGGGTGGTATGAGATTGTGATTGAGGTAGAGGAGGAGGTTGAGGTTGAGATTGAGTAGATTGGGTGGTATGAGATTGAGATTGAGGTGAAAGTTGAGTAGGTCGAGGTTGACTTCGAGATCGGGTTCGAGGGCGGGTTTGAGGTTGAGATTGAGTGAGTTGAGGAGGAGGTTGGGATTGAGTGAATTGAGTTCGAGGTCGAGTTTGAGATCGGGTTCGAGGTTGGTCATTGAAGCAAGCCTGTGACATGTTTAACATTGTAACAGCAGCAGACAACTCTGATGTATTTTTACACCTTGGTGACACTGAATGCACTTCAACATCATTATTAATATGAGGAAGTTTCTCTCCATGGGATGTCCAAAACCAATATCTGGGTGTAAACCCTTTTTTAATAATGTGAACATTTACTTCTTCTGGGGTTAAATGCTTTGCATTTTTACATAACTTACAAGGACATCTTATTACACCTTCATTCAAATACTTTGGTTGCTGACAAGCAAAATCAATAAAATCCTTGACACCTTTCAAAAATTCTGTTGTATAACCCTTTTGACCAGGAAGAAGCCTATTATACATCCATGTTCGGTGTGTAGGCTTTTCCATTTTTCAATGCAGCTCCAAAAATTACTGTATAAGTATTTATTTCAAATGTTAGAAATCTAAAAGTAAGAGTCAAACAATAAAAAAAAATAATGTTCCAATTTAATCCATCAATCAAAACTTAAAAATAGATACATTTGGAACACATTCATTTTAAACTCTTAAAATGCAAAAATGCCAG
Coding sequences of Glyma16g19435
>Glyma16g19435.1   sequence type=CDS   gene model=Glyma16g19435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCCTTCAGGAATAATGAAGTATCCCAGAGGAAAGCTTCCTCTTCCCATCATTGTCATCACAACATGTGTTCTTGTTTTTGTGGCTATCTTGTATGTAGAGAGGCTCAGTTTCCTCTCTTCCAAGTCCATTTTCAAGTTCAAACCATGTCCTAGAAAAACCACCAAAACAAAGTCTATAGGTGACAAAAAAGCAGATGAGGAGGTTGGGGTTGTGAATGCATCAACATGGATTGATGACAGGTTTGATTTTGACCCTGAGGAGTGCAATGTTGCAAATGGGAAATGGGTGTTTAACCATTCAATAAAGCCTCTCTACTCTGACATAAGCTGTCCATACATAGATAGACAATTTTCTTGTGTCAAGAATGGGAGGAATGATTCTGACTATCACCATTGGGAGTGGCAGCCAGAAGATTGCACCTTGCCACGTTTCAACCCAGAGCTAACCCTCAGAAAGCTTCAAGGGAAAAGGCTGCTATTTGTGGGGGATTCACTGCAAAGAAACCAATGGGAATCTTTTGTCTGCTTGGTAGAATGGGTCATACCTCATAAGCATAAATCTATGCAACTAGGAAGAGTTCATTCAGTCTTCACAGCCAAGGTATTGATACATGCGTTGAATATATTATGGTCAAAGATGTTGACTCAACTCAATCAGCTCTTAAAAACAATACTTAGATGCAGTTTTCGATGTTGTTTTCCAATTAAAATTAGAATTTTACCTCGGTGA

>Glyma16g19435.2   sequence type=CDS   gene model=Glyma16g19435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCCTTCAGGAATAATGAAGTATCCCAGAGGAAAGCTTCCTCTTCCCATCATTGTCATCACAACATGTGTTCTTGTTTTTGTGGCTATCTTGTATGTAGAGAGGCTCAGTTTCCTCTCTTCCAAGTCCATTTTCAAGTTCAAACCATGTCCTAGAAAAACCACCAAAACAAAGTCTAGTGACAAAAAAGCAGATGAGGAGGTTGGGGTTGTGAATGCATCAACATGGATTGATGACAGGTTTGATTTTGACCCTGAGGAGTGCAATGTTGCAAATGGGAAATGGGTGTTTAACCATTCAATAAAGCCTCTCTACTCTGACATAAGCTGTCCATACATAGATAGACAATTTTCTTGTGTCAAGAATGGGAGGAATGATTCTGACTATCACCATTGGGAGTGGCAGCCAGAAGATTGCACCTTGCCACGTTTCAACCCAGAGCTAACCCTCAGAAAGCTTCAAGGGAAAAGGCTGCTATTTGTGGGGGATTCACTGCAAAGAAACCAATGGGAATCTTTTGTCTGCTTGGTAGAATGGGTCATACCTCATAAGCATAAATCTATGCAACTAGGAAGAGTTCATTCAGTCTTCACAGCCAAGGTATTGATACATGCGTTGAATATATTATGGTCAAAGATGTTGACTCAACTCAATCAGCTCTTAAAAACAATACTTAGATGCAGTTTTCGATGTTGTTTTCCAATTAAAATTAGAATTTTACCTCGGTGA
Predicted protein sequences of Glyma16g19435
>Glyma16g19435.1   sequence type=predicted peptide   gene model=Glyma16g19435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPSGIMKYPRGKLPLPIIVITTCVLVFVAILYVERLSFLSSKSIFKFKPCPRKTTKTKSIGDKKADEEVGVVNASTWIDDRFDFDPEECNVANGKWVFNHSIKPLYSDISCPYIDRQFSCVKNGRNDSDYHHWEWQPEDCTLPRFNPELTLRKLQGKRLLFVGDSLQRNQWESFVCLVEWVIPHKHKSMQLGRVHSVFTAKVLIHALNILWSKMLTQLNQLLKTILRCSFRCCFPIKIRILPR*

>Glyma16g19435.2   sequence type=predicted peptide   gene model=Glyma16g19435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPSGIMKYPRGKLPLPIIVITTCVLVFVAILYVERLSFLSSKSIFKFKPCPRKTTKTKSSDKKADEEVGVVNASTWIDDRFDFDPEECNVANGKWVFNHSIKPLYSDISCPYIDRQFSCVKNGRNDSDYHHWEWQPEDCTLPRFNPELTLRKLQGKRLLFVGDSLQRNQWESFVCLVEWVIPHKHKSMQLGRVHSVFTAKVLIHALNILWSKMLTQLNQLLKTILRCSFRCCFPIKIRILPR*






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