|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G51820 | AT | Annotation by Michelle Graham. TAIR10: UbiA prenyltransferase family protein | chr3:19216301-19218934 REVERSE LENGTH=387 | SoyBase | E_val: 5.00E-79 | ISS |
GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
GO:0004659 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity | SoyBase | N/A | ISS |
GO:0046408 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chlorophyll synthetase activity | SoyBase | N/A | ISS |
PTHR11048 | Panther | PRENYLTRANSFERASES | JGI | ISS | |
PTHR11048:SF12 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF01040 | PFAM | UbiA prenyltransferase family | JGI | ISS | |
UniRef100_F8SPG5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chlorophyll synthase n=1 Tax=Camellia sinensis RepID=F8SPG5_CAMSI | SoyBase | E_val: 1.00E-82 | ISS |
UniRef100_I1MMP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MMP8_SOYBN | SoyBase | E_val: 5.00E-89 | ISS |
Glyma16g19390 not represented in the dataset |
Glyma16g19390 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.16g098000 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g19390.2 sequence type=CDS gene model=Glyma16g19390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTAAACTGGTCCTTTTTTATTTACTAATAAGTGTTAAGTTCTATTATCTGGACTTGCACTGTATCTCAGAAGATCTTGATTGGTTTCTTACTGACAGGTGGGCGGGTCAGGCTTTGTTTGGAACTCTTACACCAGATATAATTGTTCTCACACTCCTATACAGCATAGCTGGATTGGGAATTGCTATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGGGCTCTAGGGCTTCAGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATATGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCTGGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAAGTCTTTTTTCAGTTCAAGTATTTCCGCAAGGACCCTGTGAAATATGATGTTAAATATCAGGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCAACTAGCCACTGA
>Glyma16g19390.2 sequence type=predicted peptide gene model=Glyma16g19390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIKLVLFYLLISVKFYYLDLHCISEDLDWFLTDRWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWICVGAIDITQLSVAGYLLGADKPFYALALLGLIIPQVFFQFKYFRKDPVKYDVKYQASAQPFLVLGLLVTALATSH*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||