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Report for Sequence Feature Glyma16g19340

Feature Type:gene_model
Chromosome:Gm16
Start:21308120
stop:21309136
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g19340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51820AT Annotation by Michelle Graham. TAIR10: UbiA prenyltransferase family protein | chr3:19216301-19218934 REVERSE LENGTH=387 SoyBaseE_val: 2.00E-86ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009073GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0004659GO-mf Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity SoyBaseN/AISS
GO:0046408GO-mf Annotation by Michelle Graham. GO Molecular Function: chlorophyll synthetase activity SoyBaseN/AISS
PTHR11048Panther PRENYLTRANSFERASES JGI ISS
PTHR11048:SF12Panther SUBFAMILY NOT NAMED JGI ISS
PF01040PFAM UbiA prenyltransferase family JGI ISS
UniRef100_B9SWY8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bacteriochlorophyll synthase, putative n=1 Tax=Ricinus communis RepID=B9SWY8_RICCO SoyBaseE_val: 2.00E-89ISS
UniRef100_I1MMP6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MMP6_SOYBN SoyBaseE_val: 1.00E-105ISS

Expression Patterns of Glyma16g19340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g19340
ParalogEvidenceComments
Glyma07g18470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma18g43310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g19340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g098300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g19340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g19340
>Glyma16g19340.1   sequence type=CDS   gene model=Glyma16g19340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAAATGGAAGATTCGTCTTCAACTCACAAAGCCTGTCACTTGGCCTCCGTTAGTTTGGGGAGTAGTTTGTGGTGCTGCTGCCTCGGGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAGACTCTGAATGATTGGTATGACCGAGAAATTGACGCAATAAATGAACCTTATAGATCAATTCCTTCTGGGGCAATATCTGAGAATGAGGTAATCACTCAAATATGGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGGGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCATACTGTCTTATATATATTCTGCGCCTCCTTTAAAGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCA
Predicted protein sequences of Glyma16g19340
>Glyma16g19340.1   sequence type=predicted peptide   gene model=Glyma16g19340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNFEDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRSIPSGAISENEVITQIWVLLLGGLSLAGILDIWAGHDFPIVFYLAVGGAILSYIYSAPPLKLKQNGWIGNFALGA






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