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Report for Sequence Feature Glyma16g19311

Feature Type:gene_model
Chromosome:Gm16
Start:21273245
stop:21274824
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g19311
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51800AT Annotation by Michelle Graham. TAIR10: metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=385 SoyBaseE_val: 1.00E-91ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006164GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009987GO-bp Annotation by Michelle Graham. GO Biological Process: cellular process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004177GO-mf Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity SoyBaseN/AISS
GO:0008235GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity SoyBaseN/AISS
PTHR10804Panther PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) JGI ISS
PTHR10804:SF11Panther XAA-PRO AMINOPEPTIDASE JGI ISS
UniRef100_A0EVX1UniRef Annotation by Michelle Graham. Most informative UniRef hit: EBP1 n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX1_9FABA SoyBaseE_val: 7.00E-111ISS
UniRef100_I1MMP4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MMP4_SOYBN SoyBaseE_val: 3.00E-123ISS

Expression Patterns of Glyma16g19311
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g19311 not represented in the dataset
Glyma16g19311 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g19311 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g098600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g19311
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma16g19311
>Glyma16g19311.2   sequence type=transcript   gene model=Glyma16g19311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGAATACAGTAGCATTTATAAAACCTTTAATCAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATCGTTGAGGGTGTGCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGATGTGCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGGGCTTTGGAAGACAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGGTGATTTTGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATTGAATCACAACTCATCCACTCCAAGAATTGCAGCCTACAAAAACAATAGATGATCCTGATATTAAGGCTAGCCTTGGGCACAAAGACAAAGAAGAAAGGTGGTGGGAAGAAGAAAAAAGGTAAGAAAGGGGACAAGGCAGATGAGACAACTGAAGCTGAGGCTATGAACTCAACAAACGGGGCCACTCCTCAAGAGTGACTTAACTACCCTTCCCTCTCCTCTCCTCTCCCCAAACAATGAAAGAAGCTTTTTCGTTTCATTTTCGACACCTCTTTTCAATTTTGGTACATTGTTCACCAAATTGTATTTTGCTTGCTTGGATGTCAATTTTAGTATAGTGTTCCGACATTGATTTTAATAGGAATTTATATATGCACATTTTAGTTGGGGGT
Coding sequences of Glyma16g19311
>Glyma16g19311.1   sequence type=CDS   gene model=Glyma16g19311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGAATACAGTAGCATTTATAAAACCTTTAATCAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATCGTTGAGGGTGTGCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGATGTGCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGGGCTTTGGAAGACAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGGTGATTTTGTTGCGCACATCAAATTCACAGTCTTGCTAGCCTTGGGCACAAAGACAAAGAAGAAAGGTGGTGGGAAGAAGAAAAAAGGTAAGAAAGGGGACAAGGCAGATGAGACAACTGAAGCTGAGGCTATGAACTCAACAAACGGGGCCACTCCTCAAGAGTGA

>Glyma16g19311.2   sequence type=CDS   gene model=Glyma16g19311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGAATACAGTAGCATTTATAAAACCTTTAATCAAGGATGTAAGTGATGCAATTCAAAAGGTTGCTGCTGCCTATGACTGTAAAATCGTTGAGGGTGTGCTTAGCCACCAAATGAAGCAGTTTGTTATTGATGGGAATAAAGATGTGCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGGGCTTTGGAAGACAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGGTGATTTTGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATTGA
Predicted protein sequences of Glyma16g19311
>Glyma16g19311.1   sequence type=predicted peptide   gene model=Glyma16g19311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELNTVAFIKPLIKDVSDAIQKVAAAYDCKIVEGVLSHQMKQFVIDGNKDVLSLSNPDTRVDEAEFEENEVYAIDIVTSTGDGKPKLLDEKQTTIYKRAVDKSYHLKMKASRFIFSEISQKFPIMPFSARALEDKRARLGLVECVNHELLQPYPVLHEKPGDFVAHIKFTVLLALGTKTKKKGGGKKKKGKKGDKADETTEAEAMNSTNGATPQE*

>Glyma16g19311.2   sequence type=predicted peptide   gene model=Glyma16g19311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELNTVAFIKPLIKDVSDAIQKVAAAYDCKIVEGVLSHQMKQFVIDGNKDVLSLSNPDTRVDEAEFEENEVYAIDIVTSTGDGKPKLLDEKQTTIYKRAVDKSYHLKMKASRFIFSEISQKFPIMPFSARALEDKRARLGLVECVNHELLQPYPVLHEKPGDFVAHIKFTVLLMPNGSD*






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