SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25597 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:9306103-9306585 FORWARD LENGTH=160 | SoyBase | E_val: 7.00E-16 | ISS |
| UniRef100_I1MMN7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMN7_SOYBN | SoyBase | E_val: 1.00E-109 | ISS |
| UniRef100_Q9LI85 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD49975.1 n=2 Tax=Arabidopsis thaliana RepID=Q9LI85_ARATH | SoyBase | E_val: 3.00E-13 | ISS |
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Glyma16g19200 not represented in the dataset |
Glyma16g19200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g099500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g19200.1 sequence type=CDS gene model=Glyma16g19200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGATTTGAACACGATTGGCGCTGATTGTGTGGTCATATCATGCTGCTGCCAGTGCTTGATGCTTCAAATTCTTGTATTTGTGTTGCTGAAGCTTCCCGGGAAGTTGATAAGGAAAACAAGAGAATATGCTAAAAAGCTTCGTCATAGGAAGGCAAATAATGATAGAAGGATGGGGAGAGAAATGGGTTCTTATAAAGATGTTCTTCTGAGAATTCATGAACAATCTTTTAGAATTCAAGTAGAGATGGCACTAACAGATGGTGCAGATCACAATTGTGGTGGTTGTATGGATGAAGTTGAAAAGGTGATGGAGGAGTTTTATCAAAAGGGAGAGTTTGCATTTGGGAGCTTTTGGGGGAGGAAGGGGCCATGTGGGGCTCCTACAATAGTCAACGATCATAATGATGTTAATTTTGTGAGATATCAAATAATTGATTTGGTTGGTTCCTTAAGCTAA
>Glyma16g19200.1 sequence type=predicted peptide gene model=Glyma16g19200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDLNTIGADCVVISCCCQCLMLQILVFVLLKLPGKLIRKTREYAKKLRHRKANNDRRMGREMGSYKDVLLRIHEQSFRIQVEMALTDGADHNCGGCMDEVEKVMEEFYQKGEFAFGSFWGRKGPCGAPTIVNDHNDVNFVRYQIIDLVGSLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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