Glyma16g19190 - SoyBase

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Report for Sequence Feature Glyma16g19190

Feature Type:	gene_model
Chromosome:	Gm16
Start:	21103420
stop:	21104995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g19190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25600	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr3:9307367-9307852 FORWARD LENGTH=161	SoyBase	E_val: 4.00E-85	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF40	Panther	CALMODULIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_B9RLA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9RLA1_RICCO	SoyBase	E_val: 1.00E-86	ISS
UniRef100_UPI0001817F9B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001817F9B related cluster n=1 Tax=unknown RepID=UPI0001817F9B	SoyBase	E_val: 2.00E-111	ISS

Expression Patterns of Glyma16g19190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g19190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g099600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g19190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g19190

Limit To All Plant Sequences

>Glyma16g19190.2   sequence type=transcript   gene model=Glyma16g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCTTTTTCTTTAACCAACAACGCGCTTTCCATCCACCCCTTTGAATCATTCCAAATTGCCAAGCGTGATCTATCATTGTCATACACATCACAAGACGTACACCAAAACAAACCTAGCATTCTTCTCTCCATCCATAACCGAACAAAATTAAAGAAAAAAAAAACCCACTATTCAAAACCAAATCCAAAAACCAAGACACCCCCATTAGGTAGCTAGGCCTTAATTGATCTCCTTTTCTTTCACCACCACCAACAACGATGTCCATGCTCGAAACCGACCAAATCAAGCAACTGAACGACATATTCAAGCGCTTCGACATGGACCAGGACGGCAGCCTGACCCACCTGGAGCTGGCGGCGCTCCTCCGGTCCCTGGGCATCAAACCCACCGGCGACGAAATCTACGCCCTCCTCTCTAACATGGACGAAAACGGCAACGGCTACATCGAGTTCGACGAGCTCGTGCATGCCATCATGCCTGACCTCACCGAGAGCGTCCTCATCAACCAGGAGCAGCTCCTCGAGGTCTTCCGGTCTTTCGACCGTGATGGCAACGGCTACATCACAGCCAGCGAGCTCGCGGGTTCCATGGCGAAGATGGGCCAGCCACTCACCTACCGCGAGCTCGCCTCCATGATGGCTGAGGCCGATAGCAACGGCGACGGCGTCATTAGCTTCAACGAGTTCGCCGCCCTCATGGCCAAATCCGCCGCTGAATTTCTCGGCGTCAAGGTCGCCTAGATGGCTAGATCAATACGGGGCTAATAATTTCGGGATCTTCCAAAGTTTCTAGGTGGTCTTCTAAGTACGTAATTGAGGCAATTGATACCTTCTGAGTATCTTCCTTGAATGCTCAGTCATCCTTAATCAATTAGTAAGACTATGTATGGAAATTAATTATTTAATGTTTACGACCCGGATGAAACATGCTTGGACCACATGCATAGGATGGTCTTCAGCAGATCGAATGTGCCTTAAATACCAATTTGAGTTACATTCTTTTATAAGTTCTTGGGAAGCTTTAAAC

Coding sequences of Glyma16g19190

Limit To All Plant Sequences

>Glyma16g19190.1   sequence type=CDS   gene model=Glyma16g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGCTCGAAACCGACCAAATCAAGCAACTGAACGACATATTCAAGCGCTTCGACATGGACCAGGACGGCAGCCTGACCCACCTGGAGCTGGCGGCGCTCCTCCGGTCCCTGGGCATCAAACCCACCGGCGACGAAATCTACGCCCTCCTCTCTAACATGGACGAAAACGGCAACGGCTACATCGAGTTCGACGAGCTCGTGCATGCCATCATGCCTGACCTCACCGAGAGCGTCCTCATCAACCAGGAGCAGCTCCTCGAGGTCTTCCGGTCTTTCGACCGTGATGGCAACGGCTACATCACAGCCAGCGAGCTCGCGGGTTCCATGGCGAAGATGGGCCAGCCACTCACCTACCGCGAGCTCGCCTCCATGATGGCTGAGGCCGATAGCAACGGCGACGGCGTCATTAGCTTCAACGAGTTCGCCGCCCTCATGGCCAAATCCGCCGCTGAATTTCTCGGCGTCAAGGTCGCCTAG

>Glyma16g19190.2   sequence type=CDS   gene model=Glyma16g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGCTCGAAACCGACCAAATCAAGCAACTGAACGACATATTCAAGCGCTTCGACATGGACCAGGACGGCAGCCTGACCCACCTGGAGCTGGCGGCGCTCCTCCGGTCCCTGGGCATCAAACCCACCGGCGACGAAATCTACGCCCTCCTCTCTAACATGGACGAAAACGGCAACGGCTACATCGAGTTCGACGAGCTCGTGCATGCCATCATGCCTGACCTCACCGAGAGCGTCCTCATCAACCAGGAGCAGCTCCTCGAGGTCTTCCGGTCTTTCGACCGTGATGGCAACGGCTACATCACAGCCAGCGAGCTCGCGGGTTCCATGGCGAAGATGGGCCAGCCACTCACCTACCGCGAGCTCGCCTCCATGATGGCTGAGGCCGATAGCAACGGCGACGGCGTCATTAGCTTCAACGAGTTCGCCGCCCTCATGGCCAAATCCGCCGCTGAATTTCTCGGCGTCAAGGTCGCCTAG

Predicted protein sequences of Glyma16g19190

Limit To All Plant Sequences

>Glyma16g19190.1   sequence type=predicted peptide   gene model=Glyma16g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLETDQIKQLNDIFKRFDMDQDGSLTHLELAALLRSLGIKPTGDEIYALLSNMDENGNGYIEFDELVHAIMPDLTESVLINQEQLLEVFRSFDRDGNGYITASELAGSMAKMGQPLTYRELASMMAEADSNGDGVISFNEFAALMAKSAAEFLGVKVA*

>Glyma16g19190.2   sequence type=predicted peptide   gene model=Glyma16g19190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLETDQIKQLNDIFKRFDMDQDGSLTHLELAALLRSLGIKPTGDEIYALLSNMDENGNGYIEFDELVHAIMPDLTESVLINQEQLLEVFRSFDRDGNGYITASELAGSMAKMGQPLTYRELASMMAEADSNGDGVISFNEFAALMAKSAAEFLGVKVA*

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