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Report for Sequence Feature Glyma16g18700

Feature Type:gene_model
Chromosome:Gm16
Start:20647850
stop:20649606
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g18700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37870AT Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115 SoyBaseE_val: 1.00E-43ISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0008289GO-mf Annotation by Michelle Graham. GO Molecular Function: lipid binding SoyBaseN/AISS
PF00234PFAM Protease inhibitor/seed storage/LTP family JGI ISS
UniRef100_B9S7C4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S7C4_RICCO SoyBaseE_val: 6.00E-51ISS
UniRef100_C6T0Z4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0Z4_SOYBN SoyBaseE_val: 4.00E-79ISS

Expression Patterns of Glyma16g18700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g18700 not represented in the dataset
Glyma16g18700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g18700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g100100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g18700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g18700
>Glyma16g18700.1   sequence type=CDS   gene model=Glyma16g18700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGGGACGTGAAGAATGGTAGAGCTCTCCTTGTTGCATTTCTGATGTTTCTGTTGGCATCAGAAGTGTTGATTTTGGAGGCTGAGGGTGCAGGAGAATGTGGAAAGACCCCTATAGGGTCTGCAGCTGCTAGCCTGAGCCCATGTTTGGGTGCAGTTAGCAATGTGAGGGCAAAGGTTCCATTGGCTTGTTGTGCCAGAGTTGGGGCTTTGCTCAAGACTGCTCCAAGGTGCCTCTGTGCTGTTCTTTTGTCACCTCTGGCCAAGCAAGCAAAAATCAACCCTGCCACTGCTATCACCATTCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAGGTACACTGTACCTTGA
Predicted protein sequences of Glyma16g18700
>Glyma16g18700.1   sequence type=predicted peptide   gene model=Glyma16g18700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRDVKNGRALLVAFLMFLLASEVLILEAEGAGECGKTPIGSAAASLSPCLGAVSNVRAKVPLACCARVGALLKTAPRCLCAVLLSPLAKQAKINPATAITIPKRCNIRNRPAGKKCGRYTVP*






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