SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13460 | AT | Annotation by Michelle Graham. TAIR10: SU(VAR)3-9 homolog 9 | chr4:7824653-7826605 REVERSE LENGTH=650 | SoyBase | E_val: 0 | ISS |
| GO:0009294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0018024 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0042393 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone binding | SoyBase | N/A | ISS |
| KOG1082 | KOG | Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing | JGI | ISS | |
| PTHR22884 | Panther | SET DOMAIN PROTEINS | JGI | ISS | |
| PTHR22884:SF20 | Panther | HISTONE-LYSINE N-METHYLTRANSFERASE, SUVH | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| PF02182 | PFAM | YDG/SRA domain | JGI | ISS | |
| PF05033 | PFAM | Pre-SET motif | JGI | ISS | |
| UniRef100_B9HSV4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SET domain-containing protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HSV4_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MMN1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMN1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g18500 not represented in the dataset |
Glyma16g18500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g100200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g18500.2 sequence type=CDS gene model=Glyma16g18500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCCAAACCCGAACCCTTCTGGGATACCCACATCGAAACCTCCGACGAACTCGACCTCTACTCCGAGTTCAATCGCGTCACTGAGCTCTTTCACTTCGCCTTCGGAGCCACCAACGTTGTCGACCCTTTCGGAGCCACCAATGTTGCATGCCCCGAACAGACTCCGCTGGTTCCTGTTCCTCAGGAGCTCGATTCAGCGGCCCAGCCCGACCCGAATTCGCCCTCCGAGGACGTCTTGCGAGCGATCGTTCCGGTACCGCCGGAGCAGCAGGACGGCGCGGTGGCCACCGCCACCGTGCCGAGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTGAGAGTGATGGATCTGTCTCCGAGGGACGAGGCTCATTTGCGCGAGACCGTGAGGAGGACAAGGCTCATATACGACTCGCTGCGAGTGTTGACCTCCGTGGAGGAGGAGAAGCGAGTCGCCTCAGTGGCATTGCGGCGTCTCCGGGGAGACCTGCGGGCTGCCAGCCTGATGAGAGAGCGTGGACTGTGGCTGAACCGTGACAAGAGGATCGTCGGGGCGATCCCCGGAATTATGGTTGGGGATTTGTTCCTTTTTCGGATGGAGTTGTGTGTGGTTGGATTGCACGGTCAGATACAGGCTGGAATAGATTTTCTTCCTGCAAGCATGAGTTCCACTGGAGAACCTATTGCTACCAGTGTCATTGTTTCTGGTGGCTATGAGGATGACATGGATGATGGTGAGGTTATAGTTTACACTGGCCATGGAGGGCAGGAGAAGAATTCCTCCAGGCAGATCTCTCATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAGAGGAGTATGCATTATGGTGTTGAGGTAAGGGTTATCCGTGGGATGAAGTATGAGGGGAGTGCTGCTGGGTCTGGTAAGGTGTATGTGTATGATGGGGTGTATAGGATTGTTGATTGCTGGTTTGATGTGGGGAGGTCGGGTTTTGGGGTTTATAAGTTTAAGCTTTGGAGGATTGAGGGGCAGGCTAAGATGGGTAGTGCTATTTTGAAGGAAGCTAGGAATGTTAGGAGGAGTGAGCTGGATTTGAATCCCACATCTGCTGATATGGCTAACAGGAAGGAGAATGTTGCAGTTCGGCTTTTTAATGACTTTGATGATGATCGGGGTCCTCTTTGCTATGAATATCTTGTGAGGACTTGTTTTCCGAAGTTTGTGTTTCATCAGAGTGGGAAAGCTACTGGCTGTGACTGTGTGGATGGTTGTGGTGATGGATGCTTTTGTGCTATGAAAAATGGGGGTGAGTTTCCTTACACTCTGCAGGGGCATCTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCATTTTGCTCCTGTCCTCCTCATTGTCGCAATCGTGTTGCGCAGAAGGGGCTGAAATATAGGTTGGAAGTGTTTAGGTCTAAGCAGACATCTTGGGGAGTAAGGTCCTTGGACCTTATTCAAGCTGGTTCTTTTATCTGTGAGTTTGCAGGGGTTGTTTTGACCAGGGAGCAAGCTCAACTCTTAACAATGAATGATATTTCTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCATAGTTCAACTCCAAATGTCTGGGTTCAGTTTGTTCTGCATGATCACAACAATTTGATGTTCCCACACCTTATGCTATTTGCCATGGAAAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAACTCTCTATATGTAACTGA
>Glyma16g18500.2 sequence type=predicted peptide gene model=Glyma16g18500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high PKPEPFWDTHIETSDELDLYSEFNRVTELFHFAFGATNVVDPFGATNVACPEQTPLVPVPQELDSAAQPDPNSPSEDVLRAIVPVPPEQQDGAVATATVPRRKQSRQKELVRVMDLSPRDEAHLRETVRRTRLIYDSLRVLTSVEEEKRVASVALRRLRGDLRAASLMRERGLWLNRDKRIVGAIPGIMVGDLFLFRMELCVVGLHGQIQAGIDFLPASMSSTGEPIATSVIVSGGYEDDMDDGEVIVYTGHGGQEKNSSRQISHQKLESGNLALERSMHYGVEVRVIRGMKYEGSAAGSGKVYVYDGVYRIVDCWFDVGRSGFGVYKFKLWRIEGQAKMGSAILKEARNVRRSELDLNPTSADMANRKENVAVRLFNDFDDDRGPLCYEYLVRTCFPKFVFHQSGKATGCDCVDGCGDGCFCAMKNGGEFPYTLQGHLVRGKPLIFECGPFCSCPPHCRNRVAQKGLKYRLEVFRSKQTSWGVRSLDLIQAGSFICEFAGVVLTREQAQLLTMNDISLDVSTMRNVACYMSHSSTPNVWVQFVLHDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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