SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07170 | AT | Annotation by Michelle Graham. TAIR10: Sterile alpha motif (SAM) domain-containing protein | chr3:2280428-2282097 FORWARD LENGTH=203 | SoyBase | E_val: 6.00E-60 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG4374 | KOG | RNA-binding protein Bicaudal-C | JGI | ISS | |
| PTHR10627 | Panther | SCP160 | JGI | ISS | |
| PTHR10627:SF11 | Panther | STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEI | JGI | ISS | |
| PF00536 | PFAM | SAM domain (Sterile alpha motif) | JGI | ISS | |
| UniRef100_B9S502 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9S502_RICCO | SoyBase | E_val: 1.00E-65 | ISS |
| UniRef100_I1MMM8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMM8_SOYBN | SoyBase | E_val: 3.00E-152 | ISS |
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Glyma16g18440 not represented in the dataset |
Glyma16g18440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g100600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g18440.2 sequence type=transcript gene model=Glyma16g18440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACATTTTTCTCACAAAAACACCGTTATTGTTTCGCTTTTAACAACATTCACCACCCTTTCGCGACGAAGAGAAAAATGGGGGTGTTAGGGTGTTGATTCTCTGCGACGCTCTTCGCATTGCGGTACCCTGCACCTTCCTCGCGGTATTGCGCGCCTGTCTCACTCCCATTCCGTTTTTCCGCTCCCCTCTCTGTGTTGCGAAAATAAGGGTTCATTGGTTTGGGGCTAATTCTTCTTCCGATTTCGAGCCGAGTGAAATCGTTAAGAGAGAAAATGTACGCTGATCGTATGGAGGGTGGAGCCAGGAGGCCCGTGAAGGAACGCCTTAATAATGGGAATGGCGTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTCTTCAACTTGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACATGCGGGATCTCCATGAAAGGCTATCAGGGACAATGTCACCACAACTTACAAATGCTGATCAGCCAAAGACAAAAGTTGTTAAATCAAGCAGTAAAAGTGTTGGTGTTGAGGCCCCTGCAGTGCAGATCAAAAGGCCAGCTGACCTAACTCCTAAAAAGTCACAAAAGGCTGGTTCTTCAGTTGATGAATTTTTGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGTATACCAATGACGTGCCAAGCTACAACGTATCTTTTATGGTTCTTGGTGGCTTGAATAAATGGATTGGGTCAGCATATTCCTCTTGCAGACCAGCCAAATAAGCATCGACAAGATAGTCTTCGGATAAGTGAAGTTTACAAGAAATCACATCAAATGCATTATTAAATTCTGCCAAGGTGCCATGCTGTTGCAAAAACATCAAATCTTTAAGGCGATCTTGATGGCATGTATGGTGGTGCCTTTCTCTGTAGCCATGTCCAAGATTGATGGAGGCATAATACCTTTTGCACGTTAGCTGATGAAGCTGATTAGAAATAGCCTCCACCATGGACCAAGAAAGAAGATACTTTTAGCACTGGAGTCGAAAGTCTGACCATTTAGTAATGGAATTGATTTTCTAAGCTGGATGAACCTGTTTATGGACGGTGGTGGGAGATCAGGATTTAAAAACCAAGTGTAATAGCATAGTTCTTTGATTATTTTCGTTTTTAATATTTTTCCTTACTTTTTAGACATTAATCAAGTGATTTAAATTGAAATGCTTGCGGCATAAGCTCGTGTAGGATTTATGTCATGGTCATTATCATATTCTCTATTGACACGGATAATTGGGGGCGCCTTTTTGTTTTAATTAAAATTGCATTTTCAGAGACCA
>Glyma16g18440.1 sequence type=CDS gene model=Glyma16g18440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACGCTGATCGTATGGAGGGTGGAGCCAGGAGGCCCGTGAAGGAACGCCTTAATAATGGGAATGGCGTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTCTTCAACTTGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACATGCGGGATCTCCATGAAAGGCTATCAGGGACAATGTCACCACAACTTACAAATGCTGATCAGCCAAAGACAAAAGTTGTTAAATCAAGCAGTAAAAGTGTTGGTGTTGAGGCCCCTGCAGTGCAGATCAAAAGGCCAGCTGACCTAACTCCTAAAAAGTCACAAAAGGCTGGTTCTTCAGTTGATGAATTTTTGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGTATACCAATGGGACCAAGAAAGAAGATACTTTTAGCACTGGAGTCGAAAGTCTGA >Glyma16g18440.2 sequence type=CDS gene model=Glyma16g18440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACGCTGATCGTATGGAGGGTGGAGCCAGGAGGCCCGTGAAGGAACGCCTTAATAATGGGAATGGCGTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCTCAGATCACTAATTGCAAAGTTAGTGCTCCAGATCTTCGCCTCAAGCTTCAAAGGAAGGGTCTTCAACTTGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACATGCGGGATCTCCATGAAAGGCTATCAGGGACAATGTCACCACAACTTACAAATGCTGATCAGCCAAAGACAAAAGTTGTTAAATCAAGCAGTAAAAGTGTTGGTGTTGAGGCCCCTGCAGTGCAGATCAAAAGGCCAGCTGACCTAACTCCTAAAAAGTCACAAAAGGCTGGTTCTTCAGTTGATGAATTTTTGCGGTCCTTGTGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGTATACCAATGACGTGCCAAGCTACAACGTATCTTTTATGGTTCTTGGTGGCTTGA
>Glyma16g18440.1 sequence type=predicted peptide gene model=Glyma16g18440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYADRMEGGARRPVKERLNNGNGVIGSTRQQQQRQITGKRSRQDDKWEHDLFDNDKPQITNCKVSAPDLRLKLQRKGLQLAAQSGKSSAPNMRDLHERLSGTMSPQLTNADQPKTKVVKSSSKSVGVEAPAVQIKRPADLTPKKSQKAGSSVDEFLRSLCLEKYLITFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESKV* >Glyma16g18440.2 sequence type=predicted peptide gene model=Glyma16g18440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYADRMEGGARRPVKERLNNGNGVIGSTRQQQQRQITGKRSRQDDKWEHDLFDNDKPQITNCKVSAPDLRLKLQRKGLQLAAQSGKSSAPNMRDLHERLSGTMSPQLTNADQPKTKVVKSSSKSVGVEAPAVQIKRPADLTPKKSQKAGSSVDEFLRSLCLEKYLITFQAEEVDMTALNHMTDEDLKAMGIPMTCQATTYLLWFLVA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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