SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04850 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin-associated (UBA)/TS-N domain-containing protein | chr1:1365311-1368706 REVERSE LENGTH=413 | SoyBase | E_val: 4.00E-100 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2699 | KOG | Predicted ubiquitin regulatory protein | JGI | ISS | |
| PTHR13020 | Panther | UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAINING | JGI | ISS | |
| PTHR13020:SF20 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00627 | PFAM | UBA/TS-N domain | JGI | ISS | |
| PF09409 | PFAM | PUB domain | JGI | ISS | |
| UniRef100_D7KE84 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-associated /TS-N domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KE84_ARALL | SoyBase | E_val: 3.00E-99 | ISS |
| UniRef100_UPI000233EA74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA74 related cluster n=1 Tax=unknown RepID=UPI000233EA74 | SoyBase | E_val: 0 | ISS |
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Glyma16g18421 not represented in the dataset |
Glyma16g18421 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g100800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g18421.1 sequence type=CDS gene model=Glyma16g18421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCTCCAAAAGTGAACGAAAAGTTGCTTGAAGACCTTGAAGTAATGGGATTTCCAAAGGCACGAGCAACCAGAGCACTTCATTATTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATCATTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGACATTGATATAGAGTCCACTGAATCATTCCCTATCACAGAAGAAATGAGAATGAAAGCACAGAGTTTAAGGGTACAAGAGCGCAAAAGGAAAGAGGAGGAAGAGAAAAGATTGGAGAGAGAACGGGAGAAGGAGAGGATTCAAGCTGGTAAGAGACTCCTTGAGGCTAAGCGAATTGCGGAAGAAAATGAAAGAAAACGGAATCTAGCATTGAAAAAAGCAGAAAAAGAAGAAGAGAAAAGAGCTAGAGAAAAAGTTCTCAAGAAACTAGAGCAGGATAAGTTAAATAGAAGGTATAAACAAGGATTGCCTTTAGAAGGCCAAGCAGCTGTGAGATCTTCTGCTATTGAAATAGAACAAGAAAAGAAGTCAAAGTCTGTTTATAATACAACAGCAAAAGCTGAACAGTTAAGAGAATGTCTGAGGAATCTCAAGCGTAACCATCAGGGTGAGGATGCCAGAGTCAGAAGGGCCTTTCAAACAATTTTAGTCTATGTTGGAAATGTTGCCAAGAATCCCAAGGAGGACAAGTACAGGAAAATTCGACTGAATAACCCATTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAGCTGTGTGGTTTTGAGAGAACGGGTGACTTCTTGTATCTTCCTGATGAAAAGGTTGACATGGCACTGTTAAATTCAGCTGGTTTGGTCCTAAATTCTGCAATGACAAATCCTTTCTTTGGAGTTTTAAGTTCTACTCACAATTGA
>Glyma16g18421.1 sequence type=predicted peptide gene model=Glyma16g18421 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAPKVNEKLLEDLEVMGFPKARATRALHYSGNTSLEDAINWIIDHENDIDIDEMPLVDVDIDIESTESFPITEEMRMKAQSLRVQERKRKEEEEKRLEREREKERIQAGKRLLEAKRIAEENERKRNLALKKAEKEEEKRAREKVLKKLEQDKLNRRYKQGLPLEGQAAVRSSAIEIEQEKKSKSVYNTTAKAEQLRECLRNLKRNHQGEDARVRRAFQTILVYVGNVAKNPKEDKYRKIRLNNPLFQDRVGSLNGGVEFLELCGFERTGDFLYLPDEKVDMALLNSAGLVLNSAMTNPFFGVLSSTHN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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