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Report for Sequence Feature Glyma16g17740

Feature Type:gene_model
Chromosome:Gm16
Start:19422783
stop:19424783
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64230AT Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148 SoyBaseE_val: 2.00E-96ISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0044265GO-bp Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
KOG0417 KOG Ubiquitin-protein ligase JGI ISS
PTHR24068Panther FAMILY NOT NAMED JGI ISS
PF00179PFAM Ubiquitin-conjugating enzyme JGI ISS
UniRef100_B9T3W7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Ricinus communis RepID=B9T3W7_RICCO SoyBaseE_val: 9.00E-96ISS
UniRef100_I1MML2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MML2_SOYBN SoyBaseE_val: 9.00E-106ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g17740 not represented in the dataset

Glyma16g17740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g17740.1   sequence type=CDS   gene model=Glyma16g17740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGAAACGAATCAATATGGAATTGAAGGACCTGCAGAAAGACCCCCCTGCGTCCTGTAGTGCTGGTCCAGTGGCTAATGATATGTTCCATTGGCAAGCTACAATTATGGGCCCTATAGATAGCCCATTTGCTGGAGGTGTGTTTCTTGTGTCAATTCACTTCCCTCCTGATTATCCTTTCAAACCACCCAAGGTTTCATTTCGTACAAAGGTTTTCCACCCTAACATCAACAGTAATGGAAGTATCTGCCTTGACATCCTCAAAGAGCAATGGAGCGCTGTTCTAACAATATCTAAGGTTCTTCTATCTATATGCTCTTTGCTGACAGACCCCAACCCAGATGATCCTCTAGTGCCTGAGATTGCTCAAATGTACAAGACTAACAGAGCCAAGTATCAGGCCACTGCTCGATCATGGACTGAGAAATATGCCATGGGCTAA

>Glyma16g17740.1   sequence type=predicted peptide   gene model=Glyma16g17740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKRINMELKDLQKDPPASCSAGPVANDMFHWQATIMGPIDSPFAGGVFLVSIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSAVLTISKVLLSICSLLTDPNPDDPLVPEIAQMYKTNRAKYQATARSWTEKYAMG*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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