|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G19020 | AT | Annotation by Michelle Graham. TAIR10: chromomethylase 2 | chr4:10414526-10420936 FORWARD LENGTH=1295 | SoyBase | E_val: 2.00E-17 | ISS |
GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
UniRef100_Q94F87 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA (cytosine-5)-methyltransferase CMT2 n=1 Tax=Arabidopsis thaliana RepID=CMT2_ARATH | SoyBase | E_val: 9.00E-15 | ISS |
UniRef100_UPI000233EA69 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA69 related cluster n=1 Tax=unknown RepID=UPI000233EA69 | SoyBase | E_val: 0 | ISS |
Glyma16g17725 not represented in the dataset |
Glyma16g17725 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.16g103400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g17725.2 sequence type=transcript gene model=Glyma16g17725 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAAGCATAAAAGTTCTGCCACATATATGTTGTCACCCACCACCCATGCGATGATGCCCCTTTCGTAATTCGTACTTTTTGATTGGAAGAGATGAGTTAGACCACACTTTTATTAATTTAAAGAAACGCAACACTCTCTCAATATCACTCTTCACTTTTTCACTTTTAGCCATTCATTAGTTACCAACAAACCCTTTTTCTTCTCTTCTCTCACCACACTGCAAACAGAGTCAACAACAACACACACAAACACAACGTCATGAAATCGCCGCAGCACAAAAACAAAACACCAAAATCCCGATCAGATCCTCAACAACAACAAAAATCCAATTCCCTGGCCGTCACCGTTTTCCGAAATGCACCCGATTATTATTCCTGCGACCCCCTTATTCCGTTAAGCACGTGCCTCCCCGCCTCGGGCACGTGCGCCGCCAGAATGCGCCTACTGCCGCATGCAGATCAGGCTCTCAGTCTCCGCCGCTCCCCCCGCTTCAATTCTGCTCCGGCCGCCGTGGATGGCGGCAATGCGGGCTCCAGAAAGCGGAAGCGGTCGCCGGAAACGGCGGCGACGGCAGCGGAGGAGGAGACATCTCGGAGACGCTCCCCGAGATTCTCAACACCCGTTAAGTGCTTACCTAAAGGACCAAAATGTAGATTCCAATCTTCATTCAGATGCTAAGCCTATCAAAAATTCTCACGGGAAGTTCTTTGGTGAGAAGCACTTGAGGCAGTGCCCAGGATTAGATCCATCATGTGAGGCATATGCAGAAAAGCTTGAGGTGAAACTGCATGGTACATTGGAGCCTAGGAGATCTCCTAGACTTTCATCGTCAAATGGGAATGAAAACACGGAAATTAATGCTTCACAAGTTAAAAGAACATCAAAAGTAGTTCACCAAAAGAAAAAAAATACCAAAGTGATTTCTACTTACATTGAATTGTCTAATTCACCAGTTGAGCAGCATATGTGTGGAATTGATGATACAAAATACTTGATAAGGTCTTCAGAGGCAATCACATCCCCATCCTGGACTGAAAATGGCAGAACAACTTCTAATTCCTTTGCCTTGCCTGAGTCAGATGACAGGCCACCAAGAAAGAAATTTAATACATCTACTTCTTCAACTAAGGAATGTATAGATTCAGAAAACTTTCCTTCCTTCATTGGTGATCCAATACCTGATGATGAAGCTCAGAAAAGATGGGGATGGCGTTATGAATTAAAGGACAAAAAATGTAAAGACAACATGTTTAAAATAAACGAGGGTGAAGAAGATGAGATTATTGCAAATGTCAAATGCCATTATGCCCAAGCTGAAATTGGGAATTGTATTTTTAGTCTTGGCGATTGTGCATTTGTAAAAAGTGAGAGTGAGAGAGAAAATGAAAAAGATAAAGCTGATATTATTGCTCAGAAAGGAAAAACTCAATGA
>Glyma16g17725.1 sequence type=CDS gene model=Glyma16g17725 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATCGCCGCAGCACAAAAACAAAACACCAAAATCCCGATCAGATCCTCAACAACAACAAAAATCCAATTCCCTGGCCGTCACCGTTTTCCGAAATGCACCCGATTATTATTCCTGCGACCCCCTTATTCCGTTAAGCACGTGCCTCCCCGCCTCGGGCACGTGCGCCGCCAGAATGCGCCTACTGCCGCATGCAGATCAGGCTCTCAGTCTCCGCCGCTCCCCCCGCTTCAATTCTGCTCCGGCCGCCGTGGATGGCGGCAATGCGGGCTCCAGAAAGCGGAAGCGGTCGCCGGAAACGGCGGCGACGGCAGCGGAGGAGGAGACATCTCGGAGACGCTCCCCGAGATTCTCAACACCCGTTAAGTGGCAAGGGTCTAGGGGTCCAGAATTACCATTGAATGCTTACCTAAAGGACCAAAATGTAGATTCCAATCTTCATTCAGATGCTAAGCCTATCAAAAATTCTCACGGGAAGTTCTTTGGTGAGAAGCACTTGAGGCAGTGCCCAGGATTAGATCCATCATGTGAGGCATATGCAGAAAAGCTTGAGGTGAAACTGCATGGTACATTGGAGCCTAGGAGATCTCCTAGACTTTCATCGTCAAATGGGAATGAAAACACGGAAATTAATGCTTCACAAGTTAAAAGAACATCAAAAGTAGTTCACCAAAAGAAAAAAAATACCAAAGTGATTTCTACTTACATTGAATTGTCTAATTCACCAGTTGAGCAGCATATGTGTGGAATTGATGATACAAAATACTTGATAAGGTCTTCAGAGGCAATCACATCCCCATCCTGGACTGAAAATGGCAGAACAACTTCTAATTCCTTTGCCTTGCCTGAGTCAGATGACAGGCCACCAAGAAAGAAATTTAATACATCTACTTCTTCAACTAAGGAATGTATAGATTCAGAAAACTTTCCTTCCTTCATTGGTGATCCAATACCTGATGATGAAGCTCAGAAAAGATGGGGATGGCGTTATGAATTAAAGGACAAAAAATGTAAAGACAACATGTTTAAAATAAACGAGGGTGAAGAAGATGAGATTATTGCAAATGTCAAATGCCATTATGCCCAAGCTGAAATTGGGAATTGTATTTTTAGTCTTGGCGATTGTGCATTTGTAAAAAGTGAGAGTGAGAGAGAAAATGAAAAAGATAAAGCTGATATTATTGCTCAGAAAGGAAAAACTCAATGA >Glyma16g17725.2 sequence type=CDS gene model=Glyma16g17725 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATCAGGCTCTCAGTCTCCGCCGCTCCCCCCGCTTCAATTCTGCTCCGGCCGCCGTGGATGGCGGCAATGCGGGCTCCAGAAAGCGGAAGCGGTCGCCGGAAACGGCGGCGACGGCAGCGGAGGAGGAGACATCTCGGAGACGCTCCCCGAGATTCTCAACACCCGTTAAGTGCTTACCTAAAGGACCAAAATGTAGATTCCAATCTTCATTCAGATGCTAAGCCTATCAAAAATTCTCACGGGAAGTTCTTTGGTGAGAAGCACTTGAGGCAGTGCCCAGGATTAGATCCATCATGTGAGGCATATGCAGAAAAGCTTGAGGTGAAACTGCATGGTACATTGGAGCCTAGGAGATCTCCTAGACTTTCATCGTCAAATGGGAATGAAAACACGGAAATTAATGCTTCACAAGTTAAAAGAACATCAAAAGTAGTTCACCAAAAGAAAAAAAATACCAAAGTGATTTCTACTTACATTGAATTGTCTAATTCACCAGTTGAGCAGCATATGTGTGGAATTGATGATACAAAATACTTGATAAGGTCTTCAGAGGCAATCACATCCCCATCCTGGACTGAAAATGGCAGAACAACTTCTAATTCCTTTGCCTTGCCTGAGTCAGATGACAGGCCACCAAGAAAGAAATTTAATACATCTACTTCTTCAACTAAGGAATGTATAGATTCAGAAAACTTTCCTTCCTTCATTGGTGATCCAATACCTGATGATGAAGCTCAGAAAAGATGGGGATGGCGTTATGAATTAAAGGACAAAAAATGTAAAGACAACATGTTTAAAATAAACGAGGGTGAAGAAGATGAGATTATTGCAAATGTCAAATGCCATTATGCCCAAGCTGAAATTGGGAATTGTATTTTTAGTCTTGGCGATTGTGCATTTGTAAAAAGTGAGAGTGAGAGAGAAAATGAAAAAGATAAAGCTGATATTATTGCTCAGAAAGGAAAAACTCAATGA
>Glyma16g17725.1 sequence type=predicted peptide gene model=Glyma16g17725 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSPQHKNKTPKSRSDPQQQQKSNSLAVTVFRNAPDYYSCDPLIPLSTCLPASGTCAARMRLLPHADQALSLRRSPRFNSAPAAVDGGNAGSRKRKRSPETAATAAEEETSRRRSPRFSTPVKWQGSRGPELPLNAYLKDQNVDSNLHSDAKPIKNSHGKFFGEKHLRQCPGLDPSCEAYAEKLEVKLHGTLEPRRSPRLSSSNGNENTEINASQVKRTSKVVHQKKKNTKVISTYIELSNSPVEQHMCGIDDTKYLIRSSEAITSPSWTENGRTTSNSFALPESDDRPPRKKFNTSTSSTKECIDSENFPSFIGDPIPDDEAQKRWGWRYELKDKKCKDNMFKINEGEEDEIIANVKCHYAQAEIGNCIFSLGDCAFVKSESERENEKDKADIIAQKGKTQ* >Glyma16g17725.2 sequence type=predicted peptide gene model=Glyma16g17725 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQIRLSVSAAPPASILLRPPWMAAMRAPESGSGRRKRRRRQRRRRHLGDAPRDSQHPLSAYLKDQNVDSNLHSDAKPIKNSHGKFFGEKHLRQCPGLDPSCEAYAEKLEVKLHGTLEPRRSPRLSSSNGNENTEINASQVKRTSKVVHQKKKNTKVISTYIELSNSPVEQHMCGIDDTKYLIRSSEAITSPSWTENGRTTSNSFALPESDDRPPRKKFNTSTSSTKECIDSENFPSFIGDPIPDDEAQKRWGWRYELKDKKCKDNMFKINEGEEDEIIANVKCHYAQAEIGNCIFSLGDCAFVKSESERENEKDKADIIAQKGKTQ*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||