SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80480 | AT | Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 17 | chr1:30258272-30260570 REVERSE LENGTH=444 | SoyBase | E_val: 2.00E-111 | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009508 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| PTHR13748 | Panther | COBW-RELATED | JGI | ISS | |
| PTHR13748:SF11 | Panther | PRLI-INTERACTING FACTOR L | JGI | ISS | |
| PF02492 | PFAM | CobW/HypB/UreG, nucleotide-binding domain | JGI | ISS | |
| UniRef100_B9S1U2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Prli-interacting factor l, putative n=1 Tax=Ricinus communis RepID=B9S1U2_RICCO | SoyBase | E_val: 3.00E-141 | ISS |
| UniRef100_I1MMK8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1MMK8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g17701 not represented in the dataset |
Glyma16g17701 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g103700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g17701.1 sequence type=CDS gene model=Glyma16g17701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACAAGGTACATGACTCTGAGAACCTCCGCCAAAACCCTTTTCCATCATCTTCAACCCCCCGTTCAAGATTCTCGCTGCGCATTTCATTTGATCAGAACCCTCCATTCCTTCGTTGCCCGAGACTCAGACCCTCGCAAATTTCGTAACTCTTTTTTTTCTGGAACCTTCCGAGGCATGGTCTCTGCCCCAAACCCCAATTTCGACGAAGCTGCTTCGCTCGCCCTCGATAATCGCGTTCCTGCCACCGTCATAACGGGTTTTCTTGGCTCTGGAAAGACTACTCTCCTTAATCATATTCTCACATCTCAGCATGGAAAGCGGATAGCGGTCATTGAAAATGAGTTTGGTGAGGTTGATATTGATGGCTCATTGGTTGCTAGTCATTCTTCTGCGAGTGAAGAGATTATCATGGTTAACAATGGCTGCCTCTGCTGCACTGTACGAGGAGATCTAGTTAAAATGCTGTTGGAGCTGGTTAGGAAAAAGCGAGACAAGTTTGATCATATTGTTATTGAAACCACAGGTCTTGCAAAGCCAGCTCCTGTTATTGAAACATTTTGCAGTGATGAGCTGGTCTCTCAGCATGTAAAACTGGATGGAGTTGTAACTTTGGTTGATTGCAAGCATGCCATGAAACATTTAAATGAAGTGAAACCAAGATTTGTGGTTAATGAGGCAGTAGAACAAGTTGCATATGCTGATCGTATTATTTTGAACAAGATTGATTTGGTTACTGAATCTGAGTTAAATATATTGACTAAGAAAATTAAGCACATCAATGGAATGGCACAAATTAAGCAAGCTAAATTTGGATCTGTTGACATGGACTTTGTTCTGGGTGTGGGAGGATATGATCTTGAGAGAATTGAATCTGAGGTACCTGGAGAATGTCCCTCTTCTTCCAGCCATCAGGATGATTCTGGACATGGGTGTCCAATAGAATAG
>Glyma16g17701.1 sequence type=predicted peptide gene model=Glyma16g17701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATRYMTLRTSAKTLFHHLQPPVQDSRCAFHLIRTLHSFVARDSDPRKFRNSFFSGTFRGMVSAPNPNFDEAASLALDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSASEEIIMVNNGCLCCTVRGDLVKMLLELVRKKRDKFDHIVIETTGLAKPAPVIETFCSDELVSQHVKLDGVVTLVDCKHAMKHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTESELNILTKKIKHINGMAQIKQAKFGSVDMDFVLGVGGYDLERIESEVPGECPSSSSHQDDSGHGCPIE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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