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Report for Sequence Feature Glyma16g17600

Feature Type:gene_model
Chromosome:Gm16
Start:19125365
stop:19127072
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25780AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 3B-2 | chr5:8973420-8976758 REVERSE LENGTH=714 SoyBaseE_val: 3.00E-30ISS
GO:0006413GO-bp Annotation by Michelle Graham. GO Biological Process: translational initiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR14068Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (EIF3)-RELATED JGI ISS
UniRef100_G7J950UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit B n=1 Tax=Medicago truncatula RepID=G7J950_MEDTR SoyBaseE_val: 2.00E-44ISS
UniRef100_I1KJQ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJQ5_SOYBN SoyBaseE_val: 3.00E-57ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g17600 not represented in the dataset

Glyma16g17600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g17600.1   sequence type=CDS   gene model=Glyma16g17600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGATGTCATGGTAATGAAGGAGATCGAGGACATGGCACTGCGTCTCGGCGTCGATCTCTCCACTCTCAATCTCGACGTCATTCGCGTCGCTCCCGGCGAAGATTGCAGCATCGTTAGGTGGTTTACCAGGAAGAGAATCTTGAGTTTGAGTCTAGATTTGGTAACATCATTGTCGTGGATAACCTCCTCGTGGTTCCGAGGGAGAAGTTCGAGAAGCTCGAAGGAGTGGTTCGAAAAATTTATAGTCAAATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACCGAGAAAACCTAGGTATACACGCTCTTTCTTCAATGAAGTTGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGTTGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGGTGCCTAATGAGTGGGCTCCCCCTGAAACTAAGCCATATGCTCCAGGGCTCACTAATGCAAAGGCCGGGGACCAATTTGTGATTCGTGCTGGTTCAGATACTAAGGTTTTGTGGAATGATGCCAGACATTTAAAGCCAGATGTTTGGGGCCCTAATATAAGAGATTCCAAAGGTGTTGGATGGCTAGGGTGGGATAAGTTATGCATCTTGAAGGAGAATGGGGGTATGAGGTTTACTAGTCTTGATGCCTTTAAT

>Glyma16g17600.1   sequence type=predicted peptide   gene model=Glyma16g17600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDVMVMKEIEDMALRLGVDLSTLNLDVIRVAPGEDCSIVRWFTRKRILSLSLDLVTSLSWITSSWFRGRSSRSSKEWFEKFIVKLVLSRRMASGCRLILKPRKPRYTRSFFNEVELAKEKTHGYKLDRAHIFVVSMFDDFDRFMKVPNEWAPPETKPYAPGLTNAKAGDQFVIRAGSDTKVLWNDARHLKPDVWGPNIRDSKGVGWLGWDKLCILKENGGMRFTSLDAFN







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