SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31880 | AT | Annotation by Michelle Graham. TAIR10: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr1:11447804-11450053 FORWARD LENGTH=344 | SoyBase | E_val: 5.00E-171 | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0015250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: water channel activity | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| PTHR22870 | Panther | REGULATOR OF CHROMOSOME CONDENSATION | JGI | ISS | |
| PTHR22870:SF36 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08381 | PFAM | Disease resistance/zinc finger/chromosome condensation-like region | JGI | ISS | |
| UniRef100_Q17TI5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein BREVIS RADIX n=1 Tax=Arabidopsis thaliana RepID=BRX_ARATH | SoyBase | E_val: 2.00E-168 | ISS |
| UniRef100_UPI000233AD64 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AD64 related cluster n=1 Tax=unknown RepID=UPI000233AD64 | SoyBase | E_val: 0 | ISS |
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Glyma16g17590 not represented in the dataset |
Glyma16g17590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g104500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g17590.2 sequence type=CDS gene model=Glyma16g17590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTACGTGCATAGCGTGTACGAAGACGGATGATAAGGATGAAGAAGGAGGATCTCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATAAAGGATATGGCACTGAAGTTTTCAGGTGCATACAAGCAATGCAAACCATGCACAGGGTCCAGTAGCTACAAAAAAGGACATAGGCCATATCCAGATTTTGATACCATCTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAAGTTCAACCCCTGCATGGGACTTCACAACCTCTCACTACCCTGGTGGAAGATCTGACCCTAGATTTGCTGGGGCATATGGCGGTGACCGCACCCCGAGAGGACGTGACTCATCATCAGTTTGTGATGTAGTCTTAGAGGATGAGGATGAGCCTAAGGAGTGGATGGCACAGGTGGAGCCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAACGGAGGAAATGATCTTAAGAGAATTCGCTTCAGCCGAGAGATGTTTAATAAATGGCAAGCTCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTACAACGTCCAGAGATTTAATAAACAAGCTCTTAACACTCCTCCAAGGTCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGATTGACATCTGCAAGGGAAAGCCCCATGGCCTCAAACAAGGATTGGACGCCGAGGAGTCACTATAAGCCCTCTGGGAGCAGAGGATATTACCCGTCCGAACCGTTGGATCACGGTGGAGGCAGTGGCCAATACCATGCAGGGCCATCTATGGAACCAGCAAGGGATACCACTGCTTCTAGAGATGAGCCTTCTATCAGCAATGCCAGTGAAATGGAGACAGAATGGGTAGAACAAGACGAGCCTGGAGTTTACATTACAATCAGGCAGTTAGCTGATGGAACTAGGGAGCTTAGACGTGTCAGATTCAGCCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAACAGAGAGAGAATCCAAGCTCAATATCTTTGA
>Glyma16g17590.2 sequence type=predicted peptide gene model=Glyma16g17590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFTCIACTKTDDKDEEGGSRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSHYPGGRSDPRFAGAYGGDRTPRGRDSSSVCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNKQALNTPPRSEDEQRDSSYSRLTSARESPMASNKDWTPRSHYKPSGSRGYYPSEPLDHGGGSGQYHAGPSMEPARDTTASRDEPSISNASEMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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