Glyma16g17520 - SoyBase

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Report for Sequence Feature Glyma16g17520

Feature Type:	gene_model
Chromosome:	Gm16
Start:	19035589
stop:	19039627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g17520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48340	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:19590785-19592487 FORWARD LENGTH=510	SoyBase	E_val: 1.00E-151	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MMJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMJ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g17520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g17520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g105200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g17520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g17520

Limit To All Plant Sequences

>Glyma16g17520.1   sequence type=CDS   gene model=Glyma16g17520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCGAGCTGTTCCTGTCGGAACCGAATTGGAACGACGTCGTAAACGACGACGATTCAACTCGTTCGAGAATCTCCATTCTCAACGACTTGGAAACCGTTATTTGGTCTACGGTGGGTCGCTCCGAGGCGCGGTTGTGGCTCTGCAACACTGTCGCGGGATTGAACTGCGTAACTTCCCTCGATCAGCGTGACCTGTTTCGGAATTTGCTCAGAACCAGTGGGGTGAAGCGGGATTTGGCCTCTCAGCTCCTGCATTTGATGTTCGACACGGCGCCGCACAAACCAGGTTCCGTTTTGGCGAGGAGGAGTCACGTGCTCAATAAATTTTTTCAAGGTAATCCTAAGCGTGTATTGCAGTGGTTTTCCTGCTCTTCCTCTGGAGGTGGACTAGAGCAGGGGAAAGGTTTCAGGGCACTGTCCCAATTTGCGTTTAAAAATAGGGATATTTGTTGGGAGGAGCTGGAGTGGAAAGGAAAGCATGGACAGTCACCAGCAGTGGTTGCTACAAAGCCCCACTATTTTCTTGATTTGGACGTCCTGCAAACTGTGGAAAATTTTCTCGAAAATGTGCCTGAATTTTGGTCATCTGAAGAGTTTGCTGAGTCAGTCAAGGATGGCGATATTTTTTTCGTTGATAGGTCATTCTTTGTGCGTTATTTCATTAATTTAATGTATAAAGAGGAATTCAGAGATGTATGGGATGTTGTAAACGAATTCCTCATGCAGCAGGCCTTTTCCTCTTTGTGTGGGCGTCTTCTTATTACTCTTGAAGACCAGGACTTATGCCACTTTGTGGAATCGCTTTGTAAATCTCTCGGCCCAAAATTGGAACTTAAACATTTCAATGATGTCTCTAATTTGTTTGTGATTGTACTTTTTAAGTGTGGTTCTTATGGATCTATTGACCAGTTACTGCTGTTTAATGCTGTGATGACTCAGGGGAGGCAGCTTCTTCGCCTTTTACGTGATGAAGAGGCTTGGGAGACACAAGAAAAAATCAATGAAATTGTGTCAAAGATGTCTGCAATCCCAAACAATCCTAATAGCTTGACCCCAATCTTCAAGAGCAAATATAAGATGAAAATTATAGAAGTGATAAAGTATTTGGGACTTCTGTCATGGCTTCTTTACTATAGACTGTCAAAAGAATGCCAGACCCCTGAGTCCTGGGAGTCTGTATTTATGAATAATCAAATTGGTTTCCGTAACTCTAATAAACATGCATTGTCAGATGAGGATGGTCCATCAGAAGAAGATTGTTCAGTTAGAGTAAAAGGTAGGAGAAAAAAAAAGGCTAGAAAGAAGAGGAGGACCTATGACCGCCATGATGATGGTGATGACGAGCTACTAGATTATGATTCTGCAAGCCAGAAGTTGGTTTTTCCGTCAAATACTAGAAGTTGGTTGCTTTCAACTGATGGGTACTCTTCAGCTTGGAGCAGTGTAGATTTACCTGAGTACCTTCATAGACATTGCTTGTCTAGATGGATGACATGGCTTTTTGAAAAATGA

Predicted protein sequences of Glyma16g17520

Limit To All Plant Sequences

>Glyma16g17520.1   sequence type=predicted peptide   gene model=Glyma16g17520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIELFLSEPNWNDVVNDDDSTRSRISILNDLETVIWSTVGRSEARLWLCNTVAGLNCVTSLDQRDLFRNLLRTSGVKRDLASQLLHLMFDTAPHKPGSVLARRSHVLNKFFQGNPKRVLQWFSCSSSGGGLEQGKGFRALSQFAFKNRDICWEELEWKGKHGQSPAVVATKPHYFLDLDVLQTVENFLENVPEFWSSEEFAESVKDGDIFFVDRSFFVRYFINLMYKEEFRDVWDVVNEFLMQQAFSSLCGRLLITLEDQDLCHFVESLCKSLGPKLELKHFNDVSNLFVIVLFKCGSYGSIDQLLLFNAVMTQGRQLLRLLRDEEAWETQEKINEIVSKMSAIPNNPNSLTPIFKSKYKMKIIEVIKYLGLLSWLLYYRLSKECQTPESWESVFMNNQIGFRNSNKHALSDEDGPSEEDCSVRVKGRRKKKARKKRRTYDRHDDGDDELLDYDSASQKLVFPSNTRSWLLSTDGYSSAWSSVDLPEYLHRHCLSRWMTWLFEK*

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