SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31830 | AT | Annotation by Michelle Graham. TAIR10: Amino acid permease family protein | chr1:11418875-11420362 REVERSE LENGTH=495 | SoyBase | E_val: 0 | ISS |
| GO:0015846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine transport | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015203 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polyamine transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1287 | KOG | Amino acid transporters | JGI | ISS | |
| PTHR11785 | Panther | AMINO ACID TRANSPORTER | JGI | ISS | |
| PTHR11785:SF78 | Panther | CATIONIC AMINO ACID TRANSPORTER | JGI | ISS | |
| PF00324 | PFAM | Amino acid permease | JGI | ISS | |
| UniRef100_G7K6T4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Amino acid permease-like protein n=1 Tax=Medicago truncatula RepID=G7K6T4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MMJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MMJ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g17460 not represented in the dataset |
Glyma16g17460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g105500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g17460.1 sequence type=CDS gene model=Glyma16g17460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGATGTTCAGTGGTGCCGAGTATGTGCCTATTGGTAATGATGAGTTACCTTCTCCAAGAGAAAATCACATGAGGAGAGTTTCTGTTCTTCCTCTGGTATTTCTCATCTTCTATGAGGTTTCTGGGGGACCCTTTGGTGTTGAGGACACAGTGCATGCAGCAGGTCCTCTATTAGCCCTTATGGGGTTCTTGGTTTTCCCATTCATATGGAGTGTTCCTGAGGCTCTGATCACTGCAGAGATGAGCACCATGTTCCCTGAGAACAGTGGCTATGTGGTTTGGGTCTCTTCTGCTTTGGGTCCCTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTAAGTGGGGTGATTGACAATGCTTTGTATCCAGTTCTGTTTCTTGACTATTTGAAATCAGGTATCCCTGCATTGGGTGGTGGGGTTCCCAGAACTGTTTCAACTTGGGCCTTAACTGTGGCTCTCACTTGCTTGAACTATAGGGGTTTAACCATTGTGGGAATGGTTGCAGTTCTGTTAGGTGTTTTCTCACTCCTTCCTTTTGTTGTCATGGGACTCTTGTCAATTCCAGACCTGAAACCTTCAAGATGGTGTGTGATGAATCTGGATGATGTTGATTGGAATCTGTATTTGAATACTTTGTTTTGGAACCTCAATTATTGGGACTCTATTAGTACTCTTGCTGGGGAAGTGGATAATCCAAGGAGAACTCTTCCCAAGGCTCTATTTTATGCTTTGATCCTTGTGGTTTTGGGCTATTTTTTCCCTCTTTTGATTGGCACTGGTGCTGTTCCTCTCAATAGGGACTTGTGGACTGATGGGTACTTCTCAATTATTGCTGAGATTGTTGGAGGAGTGTGGTTGAGGTGGTGGCTTCAAGCTGCTGCTGCAATGTCTAACATGGGAATGTTTGTTGCTGAAATGAGCAGTGACTCATTCCAGCTTCTAGGGATGGCAGAGAGGGGCATGCTACCCGAGTTCTTCAGCAAGAGGTCCCGTTTCGGAACCCCTCTTGTAGGAATACTCTTTTCGGCCTCTGGTGTGATCTTACTGTCATGGCTGAGTTTTCAGGAGATTGTGGCTGCTGAAAACTTCTTGTACTGCTTTGGCATGATTTTGGAGTTTGTTGCATTCATATTGTTGAGGATCAGACACCCCAATGCGTCTAGGCCTTACAAGGTTCCAGGGGGAACAGCTGGAGCAATTACTATCTGCATTCCTCCCACAGTTTTGATTTTTGTGGTGCTCGCTTTCTCCTCCAACAAAGTGCTGGTTATAAGCCTCATCGCTATGGCGATTGGCCTTGTAATGCAACCATGTCTTAAAATTATGGAGGAAAGGAGATGGATGAAGTTCTCTGTTAGATCTGAGCTCCAGGATCTTGACAATAATGAGGAGAGCATTCACTCTTTTGTGGGTTAA
>Glyma16g17460.1 sequence type=predicted peptide gene model=Glyma16g17460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGMFSGAEYVPIGNDELPSPRENHMRRVSVLPLVFLIFYEVSGGPFGVEDTVHAAGPLLALMGFLVFPFIWSVPEALITAEMSTMFPENSGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGIPALGGGVPRTVSTWALTVALTCLNYRGLTIVGMVAVLLGVFSLLPFVVMGLLSIPDLKPSRWCVMNLDDVDWNLYLNTLFWNLNYWDSISTLAGEVDNPRRTLPKALFYALILVVLGYFFPLLIGTGAVPLNRDLWTDGYFSIIAEIVGGVWLRWWLQAAAAMSNMGMFVAEMSSDSFQLLGMAERGMLPEFFSKRSRFGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFGMILEFVAFILLRIRHPNASRPYKVPGGTAGAITICIPPTVLIFVVLAFSSNKVLVISLIAMAIGLVMQPCLKIMEERRWMKFSVRSELQDLDNNEESIHSFVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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