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Report for Sequence Feature Glyma16g17370

Feature Type:gene_model
Chromosome:Gm16
Start:18815114
stop:18817900
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49010AT Annotation by Michelle Graham. TAIR10: breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206 SoyBaseE_val: 7.00E-121ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3295 KOG 60S Ribosomal protein L13 JGI ISS
PTHR11722Panther 60S RIBOSOMAL PROTEIN L13 JGI ISS
PF01294PFAM Ribosomal protein L13e JGI ISS
UniRef100_I1MMI6UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L13 n=1 Tax=Glycine max RepID=I1MMI6_SOYBN SoyBaseE_val: 2.00E-148ISS
UniRef100_I1MMI6UniRef Annotation by Michelle Graham. Best UniRef hit: 60S ribosomal protein L13 n=1 Tax=Glycine max RepID=I1MMI6_SOYBN SoyBaseE_val: 2.00E-148ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g17370 not represented in the dataset

Glyma16g17370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g08090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g106300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g17370.4   sequence type=CDS   gene model=Glyma16g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAGACCAGAAGACGGTTGGCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCCAGGCCTACTGCTGGATCTCTCAGGCCTATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATCACCGCAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGAGGCTCAAAACCTACAAGGCTAAGTTGGTTGTGTTCCCAAGAAGGGCACACAAGGTCAAGGCTGGTGATTCTAGCCTTGAAGAGCTGGCAAATGCCACTCAAGTCCAGGGTCCATTCTTGCCCATTGTGAGGGAGAAGCCAACTGTTGACCTTGTTAAGGTAACAGATGAAATGAAGGCCTTCAAAGCATACTATAAGCTTCGTCTTGAACGCACCAACAAACGCCACCATGGTGCCCGCCTAAAGAAGGCTGCTGAAGCAGAGAAGGAGGACAAGAAATAA

>Glyma16g17370.4   sequence type=predicted peptide   gene model=Glyma16g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRAHKVKAGDSSLEELANATQVQGPFLPIVREKPTVDLVKVTDEMKAFKAYYKLRLERTNKRHHGARLKKAAEAEKEDKK*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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