|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G32520 | AT | Annotation by Michelle Graham. TAIR10: serine hydroxymethyltransferase 3 | chr4:15689642-15692334 REVERSE LENGTH=529 | SoyBase | E_val: 1.00E-99 | ISS |
GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
GO:0006544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycine metabolic process | SoyBase | N/A | ISS |
GO:0006563 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-serine metabolic process | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0004372 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycine hydroxymethyltransferase activity | SoyBase | N/A | ISS |
GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
PTHR11680 | Panther | SERINE HYDROXYMETHYLTRANSFERASE | JGI | ISS | |
PF00464 | PFAM | Serine hydroxymethyltransferase | JGI | ISS | |
UniRef100_I1M1L2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine hydroxymethyltransferase n=1 Tax=Glycine max RepID=I1M1L2_SOYBN | SoyBase | E_val: 2.00E-113 | ISS |
UniRef100_UPI000233E90C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E90C related cluster n=1 Tax=unknown RepID=UPI000233E90C | SoyBase | E_val: 4.00E-130 | ISS |
Glyma16g17060 not represented in the dataset |
Glyma16g17060 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.16g108100 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g17060.1 sequence type=CDS gene model=Glyma16g17060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTTTTATATGTTATTTGAATTTATGACTAAGAATGATCTATTTTGTCCATGGAATCACATGCAATTGCAAATACTAGGTGATGGAAGTAGCTTCCTAGACTATGGCTTGAGTGAAGCTGATCCTGAAGTTCGCGCAATTATTGACAAGGAAAAGGACCGGCAATTTAAAAGTCTTGAGCTTATTGCTTCTGAGAATTTTACATCTAGAGCAGTGATGGAAGCAGTTGGTTCCTGCCTCACAAATAAATACTCAGAAGGATTGCCGGGTAAAAGGTACTATGGTGGCAATGAGTACATTGATGAGCTTGAAACCCTATGTCAACAAAGGGCTTTGGCTACATTTCATGTAGATGGAAATAAGTGGGGTGTTAATGTTCAAGCTTTATCTAGTTCCCCAGCTAATTTTGCAGTATTCACTGCAGGTTTGGACTTGCCTCACGGAGGACATTTGTCTCATGGGTTCGTGACACCTAAAAAACGTGTATCAGCCACATCAATTTATTTTGAATGTCTTATTGATTATGATATGCTGGAGAAAATTACTACTCTTTTTCGACCAAAACTCATTATTGTTGGTGCCAGTGCTTATCCTCGAGACATTGACTACCCTTGCATGAGAAAAGTATGTTTTGTACTTATGCATTTTCTGGAATTATAA
>Glyma16g17060.1 sequence type=predicted peptide gene model=Glyma16g17060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high NFYMLFEFMTKNDLFCPWNHMQLQILGDGSSFLDYGLSEADPEVRAIIDKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQQRALATFHVDGNKWGVNVQALSSSPANFAVFTAGLDLPHGGHLSHGFVTPKKRVSATSIYFECLIDYDMLEKITTLFRPKLIIVGASAYPRDIDYPCMRKVCFVLMHFLEL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||