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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19380 | AT | Annotation by Michelle Graham. TAIR10: Long-chain fatty alcohol dehydrogenase family protein | chr4:10568427-10572288 REVERSE LENGTH=726 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0046577 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: long-chain-alcohol oxidase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG1238 | KOG | Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) | JGI | ISS | |
| PTHR10668 | Panther | PHYTOENE DEHYDROGENASE | JGI | ISS | |
| PTHR10668:SF14 | Panther | PHYTOENE DEHYDROGENASE | JGI | ISS | |
| PF00732 | PFAM | GMC oxidoreductase | JGI | ISS | |
| PF05199 | PFAM | GMC oxidoreductase | JGI | ISS | |
| UniRef100_G7L7T8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GMC-type oxidoreductase, putative n=1 Tax=Medicago truncatula RepID=G7L7T8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AD6B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AD6B related cluster n=1 Tax=unknown RepID=UPI000233AD6B | SoyBase | E_val: 0 | ISS |
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Glyma16g16415 not represented in the dataset |
Glyma16g16415 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g108900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g16415.1 sequence type=CDS gene model=Glyma16g16415 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAGAAAAAGCATGGAGAGCAATGGGGAGAGCCATAGCAGAAGTGGTAGCTTCAGGGTGGGGTTCGGGTTGGGTCCGAATGAGGCAAAAGTTCACACTGTGGTTGAGCTTGGTAGTGTTGATTATACGCACACTACTACCACTTGTCTTCTTCTAGATGATGATGATGATGTTGGTGAGGAGAGAGAGAAAGAGCAGAAAAAACCTCTTACAAACTCTCTCTCTCCTAGGCAGATGAAGTCCCTTGTTGCTCTCTGTGACACCCTATTACCTTCCATCAACAACAACAGCAACAACGTTTGTGGCTCGGATGATGATGAATCTGTTGCCAACTTCTATAAGACTTCGGCTTCGATGGCTGGAACACCTGAGCATCTTGGGATATTGATTAGTGAGAAACTGAGGCACCCAAGTACATGGCTCTTGTTGCTGTCATTATGGCTGCTGTCCACATGGTTTGGCACATTCATACTGTGTGGCATGTTGAGCCTCTCAACAAAGTTTCCCTTCTTCCATAGCTACCCTGAGTTGTCTCTTCTTAAACAGCAAAAAGTGATGCAGTCTTGGTCTCTCAGTTACCTTCGACCTCTTAGGATGTTGTTCAGAACTATCAAGCTTCTCACTCTCCTTGTCTTCTTCACTCAGCTAGATGAAGCAGAAGACAACCCATCATGGAAGGCAATTAACTATTGTGGACCTGATCCAGAGTTCAAATCACAGTTGAAGAACCACTTCTTTACAAAGGAAAGAGGACAAGAGGAAAAAGAAGATGAAGACTATGATGATGGTACTGAAGATGTTAGAGGGCCTCTTTACAAAGGTCTTATATACATAAATTACCCACGAGACATCATCACAGATTCTCTAAGACGAGTTGGATTCTCTGTCTCTGCTACTCCCAAAAAGACTAAGGCTTCTAGCCTCTCATCTCCTTCTTTGGTTATCCAATGTGATGCTGTGGTTGTTGGTTCTGGCTCTGGAGGAGGGGTAGTGGCTGGGGTTCTAGCAAATGCTGGTTATAAAGTGCTGGTGTTGGAGAAAGGAAGTTATTCTGCTAGGAACAATCTTTCCCTTCTTGAAGGACCAAGCATGGACCAAATGTACCTCTCCAATGGTTTGGTTGCCACAAAGGATATGTCTGTGCTAATACTAGCAGGTTCCACAGTTGGTGGAGGGTCTGCAATCAACTGGTCAGCCAGCATCAGAACTCCTCAACATGTGTGCAAGGAGTGGTGTGACGGCCACGAGCTCGAATTGTTTGAGAGTAAGTTGTACAAAGAAGCCTTGGATGTTGTGTGTGAGAAAATGGGAGTGCAATCTGAGATTGATGATGAAGGATTCAACAATGCTGTTTTAAGAAGAGGGTGTCTAGAAATGGGGTATCCAGTGTGCGATATTCCTAGGAATGCTTCGTCGGATCACTACTGTGGCTGGTGTTGTATGGGGTGCAAGGATGGAAGGAAGAAAGGTACACTAGAAACATGGCTAGTGGACTTGGTGAAATCAGGTAATGGTGCAATCATTCCGAGTTGTGAGGCTATTCAAGTGTTGCATAAGAAAAAGAAAGGAAGAGACAGAAAAATAGCAAGGGGAGTGGCTTTTGCAATTGAATACAAGGGGAAAAGGGACATTTGTGTAGTAGAGTCAAAGGTCACAGTTGTAGCTTGCGGAGCACTTAGTACTCCAGCATTGCTTAAAAGAAGTGGATTGAAGAATGAAAACATAGGGAGAAACTTGCACCTTCATCCAGTGGCAATGGCTTGGGGATACTTCCCTGATTCACTTTCACCTGAGTTGTGGCCAGAGAAGCATAAAAAGAGCTATGAAGGAGGGATTATGACGGCAATGTCCACAGTTGTTGCACAGTTTGACAAATCTGGATATGGTGCAGTGATCCAGACACCTGCATTGCATCCTGGTATGTTCTCAATTCTAATGCCATGGACTTCTGGCAAGGATATAAAAGATCGAATGCGCAAGTTTTCTAGAACGGCTCACGTGTTTGCACTGGCAAGGGATCAAGGATCAGGAACTGTGAATTCGCCTTCCCATATAAGTTATCAGTTGAAAGACGTCGACAAAGAGAATCTAAAGATTGGACTTGAGAAGGTACTGAGGATTCTTGCAGCAGCTGGAGCTGAAGAAATTGGGACCCATAACAACAAGGGAAGGAGCATAAATGTGAAGCAGGTGAGCTATCATGAGTTTGAGAAATTTGTGAAAGAAGAAAGTTCAATGTCTTTGACAGACATTTCTACACCATTGTGTTCAGCACATCAAATGGGAAGCTGCAAGATGGGTACCAACCCAAGGGAATCAGTTGTGAACCAAATGGGGGAGACATGGGAAGTGGAGGGCCTTTATTTGGCAGACACAAGTGTCTTTCCCACTGCTTTGGGTGTGAATCCGATGGTCACTGTTCAGGCTATTTCTTACTGCACAGCACAATATGTTCTTGAAGTTCTTAGAAGGAAAAGAAAGTGA
>Glyma16g16415.1 sequence type=predicted peptide gene model=Glyma16g16415 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNRKSMESNGESHSRSGSFRVGFGLGPNEAKVHTVVELGSVDYTHTTTTCLLLDDDDDVGEEREKEQKKPLTNSLSPRQMKSLVALCDTLLPSINNNSNNVCGSDDDESVANFYKTSASMAGTPEHLGILISEKLRHPSTWLLLLSLWLLSTWFGTFILCGMLSLSTKFPFFHSYPELSLLKQQKVMQSWSLSYLRPLRMLFRTIKLLTLLVFFTQLDEAEDNPSWKAINYCGPDPEFKSQLKNHFFTKERGQEEKEDEDYDDGTEDVRGPLYKGLIYINYPRDIITDSLRRVGFSVSATPKKTKASSLSSPSLVIQCDAVVVGSGSGGGVVAGVLANAGYKVLVLEKGSYSARNNLSLLEGPSMDQMYLSNGLVATKDMSVLILAGSTVGGGSAINWSASIRTPQHVCKEWCDGHELELFESKLYKEALDVVCEKMGVQSEIDDEGFNNAVLRRGCLEMGYPVCDIPRNASSDHYCGWCCMGCKDGRKKGTLETWLVDLVKSGNGAIIPSCEAIQVLHKKKKGRDRKIARGVAFAIEYKGKRDICVVESKVTVVACGALSTPALLKRSGLKNENIGRNLHLHPVAMAWGYFPDSLSPELWPEKHKKSYEGGIMTAMSTVVAQFDKSGYGAVIQTPALHPGMFSILMPWTSGKDIKDRMRKFSRTAHVFALARDQGSGTVNSPSHISYQLKDVDKENLKIGLEKVLRILAAAGAEEIGTHNNKGRSINVKQVSYHEFEKFVKEESSMSLTDISTPLCSAHQMGSCKMGTNPRESVVNQMGETWEVEGLYLADTSVFPTALGVNPMVTVQAISYCTAQYVLEVLRRKRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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