SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32080 | AT | Annotation by Michelle Graham. TAIR10: membrane protein, putative | chr1:11537572-11539756 REVERSE LENGTH=512 | SoyBase | E_val: 0 | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| PF04172 | PFAM | LrgB-like family | JGI | ISS | |
| UniRef100_B6U217 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LrgB-like family protein n=1 Tax=Zea mays RepID=B6U217_MAIZE | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MMF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMF4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g15800 not represented in the dataset |
Glyma16g15800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g095100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g15800.1 sequence type=CDS gene model=Glyma16g15800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATCTCTCTACCCGTTTCCATGGCAACCACAATCCATTCCTTACCCTATTCACTTCTCAAACTCAAACCACCCTCCCTCACCCCATCTCTATTTCGCCGCACGCTCTTTCCCAATTCAACTCTCAACGCCGCCCCTAAACGCACCGTTTCGTCCACCACTTTCTCACTGACGCTCACTAACGGAACCTGCAAAACCAGACACGTTGCCGCCAAATCATCCGAAGCCGACACCGGAAACACTTCCACCTCGCTAACCCAAACCGTGTTTGGGGTGCTTCATTTGGCGGTGTCCCTGGGCCTCATTCTCGCGGTGGACAAGTTTCTGAAGCAAGCGTTTGTGGCTGCCGCGATCAAGTTCCCGAGCGCGTTGTTTGGGATGTTCTGCATATTCTCGGTTCTGATTATCCTCGACTCCACCGTGCCCGCCGCCGCCACGGCGTTCGTGAGCTTCTTCGAGCCCGCGTTTATGTTCATACAGAGATGGCTCCCTCTGTTCTATGTTCCCTCTCTCGTTGTCTTGCCTCTTGCTGTCAAAGATATTCCCGCTGCCTCTGGAGCCAAAATTGGCCTCATTTTAGTTGGAGGATGGCTGGCTACACTCTGTGTTGCTGGTTACACGGCTATCGCAGTTAGAAAAGCTGTGAAAACAGAATTGGTAGATGCTGAGCCTATGGGAAAGCCTGCTCCATTTTCTTCTCTTGAAGTGTGGACTTGGACTGCTGTTCTCCTTATATCATTTGTATCTGCATTATTTTACCCTACAGCACTGGGTACAAGTGCCAGAACATGCCTTCCATTTTTGCTTGCAGCCACAGTGTTAGGCTACATGGTTGGCTCGGGGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCGATAATTTGCTGTGCTTTATCAGCAGATCTGACAGCATTTGCTTTTGGGTATTTTTCCAAGTCAGGACTTGAACCTGTGCTAGGATATTACCTTACAAAGGCATCATCAAATCCTGGAGCTGGTGACATTTTAATGGGATTTTTAGGATCTGTTATTCTCTCATTTTCCTTCTCTATGTTTAAGCAAAGAAAGCTTGTGAAAAGACATGCAGCCGAGATTTTCACCTCTGTCATCATCTCAACAGTGTTCTCACTGTACTCAACAGCCTTAGTTGGACGGCTTGTTCAATTAGAACCATCTTTAACTGTGTCCATTCTACCCAGATGTATCACAGTGGCATTGGCCCTCAGCATTGTATCCTTATTTGACGGAGCCAATTCATCTCTCACAGCAGCTGTGGTTGTATTAACCGGTCTGGTTGGAGCAAATTTTGTGCAAGCAACCCTTGATAAACTCAGCTTTCGTGATCCAATTGCTCGGGGAATAGCAACTGCTTCTAGTGCCCACGGGCTTGGAACAGCAGCTTTGTCTGCCAAGGAACCCGAGGCTCTCCCATTTTGTGCCATTGCTTATGCTCTGAATGGTATATTTGGATCCATTCTTTGCTCGATTCCTGCTGTTAGACAAAGTTTGCTTGCAATTGTTGGCTGA
>Glyma16g15800.1 sequence type=predicted peptide gene model=Glyma16g15800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSISLPVSMATTIHSLPYSLLKLKPPSLTPSLFRRTLFPNSTLNAAPKRTVSSTTFSLTLTNGTCKTRHVAAKSSEADTGNTSTSLTQTVFGVLHLAVSLGLILAVDKFLKQAFVAAAIKFPSALFGMFCIFSVLIILDSTVPAAATAFVSFFEPAFMFIQRWLPLFYVPSLVVLPLAVKDIPAASGAKIGLILVGGWLATLCVAGYTAIAVRKAVKTELVDAEPMGKPAPFSSLEVWTWTAVLLISFVSALFYPTALGTSARTCLPFLLAATVLGYMVGSGLPSNVKKVFHPIICCALSADLTAFAFGYFSKSGLEPVLGYYLTKASSNPGAGDILMGFLGSVILSFSFSMFKQRKLVKRHAAEIFTSVIISTVFSLYSTALVGRLVQLEPSLTVSILPRCITVALALSIVSLFDGANSSLTAAVVVLTGLVGANFVQATLDKLSFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSILCSIPAVRQSLLAIVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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