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Report for Sequence Feature Glyma16g15166

Feature Type:gene_model
Chromosome:Gm16
Start:16278765
stop:16280527
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24100AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family SERF | chr3:8703373-8704045 FORWARD LENGTH=69 SoyBaseE_val: 8.00E-18ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4488 KOG Small EDRK-rich protein H4F5 JGI ISS
PTHR13596Panther SMALL EDRK-RICH FACTOR 1 JGI ISS
PF04419PFAM 4F5 protein family JGI ISS
UniRef100_B6TMS6UniRef Annotation by Michelle Graham. Most informative UniRef hit: 4F5 protein family protein n=1 Tax=Zea mays RepID=B6TMS6_MAIZE SoyBaseE_val: 3.00E-09ISS
UniRef100_UPI000233E7ABUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E7AB related cluster n=1 Tax=unknown RepID=UPI000233E7AB SoyBaseE_val: 2.00E-37ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g15166 not represented in the dataset

Glyma16g15166 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g094600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g15166.2   sequence type=transcript   gene model=Glyma16g15166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTCTTCCATTCTATATTCCAACACCACTTGCACAATATTTTAGTCACCCGTCTCTCCTTCCACACTTCGCAATTCAATCTCTTTCTCTTCCTCTTCCTCTCTCTCTCTGTCTGTCTTTGTCGTACCTTTCCTTCATCCTCAGCCAACGCGGTAACCAGAGGGAACGAGATCGTGAAAGGGCTCAGGCAAGAGCTGGTGGAAAGACAAAGCAGCCTAAGAATGATGGGTTGACCCCTGAACAGCGAAGGGAAAGGGATGCAAAAGCATTGCAGGAGAAAACGGCAAAGAAAGCAGCTCAGGCTGCAGGAGGGAATAATGCAGGTGGTGGAGGCAAAAAATAGGCAAAAATCATTGACTTGAGGAATGTAAATGGAGTGTAGACATGGGAAAAATTATATTGCTTATTATTTGTGATATGGGTTTTTGGTTTAGAGTCATCTGCTTATGTCATTTCAGAATAACTGGTGTTCTGTGAGGAGGGCATTGTTGTTGGCTTATGAACCTTTGATTTCTATATAATTTGGAATGCAATTTGTCTCTAGCTTGTTGTGATGATCTTTTTGATTTTATTGTCTCTGAAGGAACAGATCTAAATGTGTGTAAGTTGATTTATATAATTTGTCAAAGGCGCCAAAATGGGTAGAGGCTTGTTAGATCGTGCAAGTCTAAACAATAGATAGTTAGAACTGTTAGCCCTTTAGGAGGAAAAGAATGTGGGAGTCTTTCGGTTTGGGAGGAAAATTTGGGAGGGAGAACATGGGTCTCAAACATTTGGAAGAGTCATGTACAATTGTATATCAAAGTAATTGAGGGTTATACTTAACTCTCCTATGTCTAGATG

>Glyma16g15166.1   sequence type=CDS   gene model=Glyma16g15166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTCTTCCATTCTATATTCCAACACCACTTGCACAATATTTTAGTCACCCGTCTCTCCTTCCACACTTCGCAATTCAATCTCTTTCTCTTCCTCTTCCTCTCTCTCTCTGTCTGTCTTTGTCGTACCTTTCCTTCATCCTCAGGGCGTTTTGTCTCATTTTGTTATTCAAGAATCAATTAAAAAAAATGACTCGCGGTAACCAGAGGGAACGAGATCGTGAAAGGGCTCAGGCAAGAGCTGGTGGAAAGACAAAGCAGCCTAAGAATGATGGGTTGACCCCTGAACAGCGAAGGGAAAGGGATGCAAAAGCATTGCAGGAGAAAACGGCAAAGAAAGCAGCTCAGGCTGCAGGAGGGAATAATGCAGGTGGTGGAGGCAAAAAATAG

>Glyma16g15166.2   sequence type=CDS   gene model=Glyma16g15166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTCTTCCATTCTATATTCCAACACCACTTGCACAATATTTTAGTCACCCGTCTCTCCTTCCACACTTCGCAATTCAATCTCTTTCTCTTCCTCTTCCTCTCTCTCTCTGTCTGTCTTTGTCGTACCTTTCCTTCATCCTCAGCCAACGCGGTAACCAGAGGGAACGAGATCGTGAAAGGGCTCAGGCAAGAGCTGGTGGAAAGACAAAGCAGCCTAAGAATGATGGGTTGACCCCTGAACAGCGAAGGGAAAGGGATGCAAAAGCATTGCAGGAGAAAACGGCAAAGAAAGCAGCTCAGGCTGCAGGAGGGAATAATGCAGGTGGTGGAGGCAAAAAATAG

>Glyma16g15166.1   sequence type=predicted peptide   gene model=Glyma16g15166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SLPFYIPTPLAQYFSHPSLLPHFAIQSLSLPLPLSLCLSLSYLSFILRAFCLILLFKNQLKKMTRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGGGGKK*

>Glyma16g15166.2   sequence type=predicted peptide   gene model=Glyma16g15166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SLPFYIPTPLAQYFSHPSLLPHFAIQSLSLPLPLSLCLSLSYLSFILSQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGGGGKK*







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