SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G30825 | AT | Annotation by Michelle Graham. TAIR10: Arp2/3 complex, 34 kD subunit p34-Arc | chr1:10961106-10962999 FORWARD LENGTH=318 | SoyBase | E_val: 2.00E-158 | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0030833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization | SoyBase | N/A | ISS |
| GO:0005856 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton | SoyBase | N/A | ISS |
| GO:0005885 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Arp2/3 protein complex | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| KOG2826 | KOG | Actin-related protein Arp2/3 complex, subunit ARPC2 | JGI | ISS | |
| PTHR12058 | Panther | ARP COMPLEX-RELATED | JGI | ISS | |
| PF04045 | PFAM | Arp2/3 complex, 34 kD subunit p34-Arc | JGI | ISS | |
| UniRef100_G0WLG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arp2/3 complex p35 subunit n=1 Tax=Nicotiana tabacum RepID=G0WLG3_TOBAC | SoyBase | E_val: 2.00E-169 | ISS |
| UniRef100_UPI000233B1CB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B1CB related cluster n=1 Tax=unknown RepID=UPI000233B1CB | SoyBase | E_val: 0 | ISS |
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Glyma16g14953 not represented in the dataset |
Glyma16g14953 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g094500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g14953.2 sequence type=transcript gene model=Glyma16g14953 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTAGTAAAAGAGAAAAAAAAGGTAGTAACTATCTAATATAGGGCATGGCCAGCATCAGCACGAGAGCCCAATTGAATCAACGAATCAATCATCATCACATCACGACGACGCATGATTCTGGTCTTGCTCTGTTCCAAAACTGAATCCCGATCACGAAGAAAAGAATCCCTCGCTTGGATCTTGCAACGTCGCGAGACGGATCCATGATACTCCTGCAGTCTCATTTTAGATTCCTGTTCCAGCCCTTGTTGATTGGGCCCCAAAATCTCGAAAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGGTGTCAATGAAGAATCCTCATGTTTTGTTGCTATCAGTATCGTTGCCTACTCCTTCTTCAGAAACTATTTTTGTCTGTGGACTTCCTTTTGGAGCCATCGAAGCAATCAAAGCTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAACCTCACATTAAAAATAAATCTGTCAAAGCTTCCGGCAAATCAAGAGCAAAAACATGCTTTTTTGGTAAAAGTTGCATCAATAAGGGAGGTTGTCCTTGGTGCACCATTGAGAGTAATTTTAGAACATCTTGCTGCCAGAACTGTTGCTCCAGACCTGGATCCACTTGTTGCCCTTGTTCATCGGCCTAATGAGTCTTTCTTTCTTTTTCCTCAGGCTGATAAGGTGACTGTAGTGTATCCTATGAGATTCAACGATTCAATAGACATTGTTCTCGCAACTTCATTCCTGCAGGAATTTGTCGAAGCCAGGCGTACAGCTGGACTTAATAATACACCTCCTTGTTCATGGTCTCTTACTCCTCCACTGGAACTAAAAGAAGTTCCCGCTGCGAATGCAGGATTTGTGACATTTGTTATCTTCCCTCGTCATGTCGAAGGCCAGAAACTGGATCGTACAGTATGGAATCTGTCAACTTTTCATGCCTATGTTAGCTATCATGTTAAGTGAACAATGTAGTTCCGGTGAATCACATGACTCCGGTGAATGCGATTCCAGTGAATGCAGACGCTGCTATGCCGGTTGCCACCGCTTCTTCCACCACAACCACGAAAGGTTTCTCACACTCGTTCTCGGAATAACTCACAAATTCCAACTATTTGCTGTGGTGTCAACAGTTTGAGCCTATGATCAAAGGACATCACCTTCACTATCTCCTCACAAGTCCACAAATTCCACCGTGATATGCATCTCTGGCGGATCGCGATGCCAAAAACGTCTCTTCTGAGTTTCTGCTTTGGGAACAACAGGATCAATTCTTGCTATCGTGGCTTCAATCCACGACTTCTGGCAAAGTTCTTCCTAGACTCATCGGTTGTAAGTCCTCCTGGCATCTTTGGGATAAACTTCATTCACACTTTCAATCTATAATTCATATGAAGAAGAAGCAGCTTCGTAATATTTCGCTGGATAATCTTTCAATTTCTGAATATCTCCTTTGAGTTCAGACCTTGATCGATTCGCTTTCATCTATTGGAGCATTTGCTCTGGCTAATGAACAAGTTGATGTCGTTCTTGAC
>Glyma16g14953.1 sequence type=CDS gene model=Glyma16g14953 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATACTCCTGCAGTCTCATTTTAGATTCCTGTTCCAGCCCTTGTTGATTGGGCCCCAAAATCTCGAAAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGGTGTCAATGAAGAATCCTCATGTTTTGTTGCTATCAGTATCGTTGCCTACTCCTTCTTCAGAAACTATTTTTGTCTGTGGACTTCCTTTTGGAGCCATCGAAGCAATCAAAGCTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAACCTCACATTAAAAATAAATCTGTCAAAGCTTCCGGCAAATCAAGAGCAAAAACATGCTTTTTTGGTAAAAGTTGCATCAATAAGGGAGGTTGTCCTTGGTGCACCATTGAGAGTAATTTTAGAACATCTTGCTGCCAGAACTGTTGCTCCAGACCTGGATCCACTTGTTGCCCTTGTTCATCGGCCTAATGAGTCTTTCTTTCTTTTTCCTCAGGCTGATAAGGTGACTGTAGTGTATCCTATGAGATTCAACGATTCAATAGACATTGTTCTCGCAACTTCATTCCTGCAGGAATTTGTCGAAGCCAGGCGTACAGCTGGACTTAATAATACACCTCCTTGTTCATGGTCTCTTACTCCTCCACTGGAACTAAAAGAAGTTCCCGCTGCGAATGCAGGATTTGTGACATTTGTTATCTTCCCTCGTCATGTCGAAGGCCAGAAACTGGATCGTACAGTATGGAATCTGTCAACTTTTCATGCCTATGTTAGCTATCATGTTAAGTGCTCAGAAGGATTTATGCATACACGTATGCGGCGTCGTGTGGAGTCCTTGATTCAGGCTCTGAATCGTGCCAAACCAGATGTCGAGAATTCAAAGAAAACTTCATACAACAGATCCTTCAAACGGCTGAGTCTCAAGGATTCAAGGACCAACTCATTTTCATAA >Glyma16g14953.2 sequence type=CDS gene model=Glyma16g14953 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATACTCCTGCAGTCTCATTTTAGATTCCTGTTCCAGCCCTTGTTGATTGGGCCCCAAAATCTCGAAAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGGTGTCAATGAAGAATCCTCATGTTTTGTTGCTATCAGTATCGTTGCCTACTCCTTCTTCAGAAACTATTTTTGTCTGTGGACTTCCTTTTGGAGCCATCGAAGCAATCAAAGCTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAACCTCACATTAAAAATAAATCTGTCAAAGCTTCCGGCAAATCAAGAGCAAAAACATGCTTTTTTGGTAAAAGTTGCATCAATAAGGGAGGTTGTCCTTGGTGCACCATTGAGAGTAATTTTAGAACATCTTGCTGCCAGAACTGTTGCTCCAGACCTGGATCCACTTGTTGCCCTTGTTCATCGGCCTAATGAGTCTTTCTTTCTTTTTCCTCAGGCTGATAAGGTGACTGTAGTGTATCCTATGAGATTCAACGATTCAATAGACATTGTTCTCGCAACTTCATTCCTGCAGGAATTTGTCGAAGCCAGGCGTACAGCTGGACTTAATAATACACCTCCTTGTTCATGGTCTCTTACTCCTCCACTGGAACTAAAAGAAGTTCCCGCTGCGAATGCAGGATTTGTGACATTTGTTATCTTCCCTCGTCATGTCGAAGGCCAGAAACTGGATCGTACAGTATGGAATCTGTCAACTTTTCATGCCTATGTTAGCTATCATGTTAAGTGA
>Glyma16g14953.1 sequence type=predicted peptide gene model=Glyma16g14953 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILLQSHFRFLFQPLLIGPQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPTPSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLVKVASIREVVLGAPLRVILEHLAARTVAPDLDPLVALVHRPNESFFLFPQADKVTVVYPMRFNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVPAANAGFVTFVIFPRHVEGQKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALNRAKPDVENSKKTSYNRSFKRLSLKDSRTNSFS* >Glyma16g14953.2 sequence type=predicted peptide gene model=Glyma16g14953 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILLQSHFRFLFQPLLIGPQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPTPSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLVKVASIREVVLGAPLRVILEHLAARTVAPDLDPLVALVHRPNESFFLFPQADKVTVVYPMRFNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVPAANAGFVTFVIFPRHVEGQKLDRTVWNLSTFHAYVSYHVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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