Glyma16g14720 - SoyBase

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Report for Sequence Feature Glyma16g14720

Feature Type:	gene_model
Chromosome:	Gm16
Start:	15614700
stop:	15629538
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g14720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44650	AT	Annotation by Michelle Graham. TAIR10: Encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage. \| chr5:18013396-18015292 FORWARD LENGTH=280	SoyBase	E_val: 5.00E-86	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0048564	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem I assembly	SoyBase	N/A	ISS
GO:0080183	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to photooxidative stress	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TA24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TA24_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E5KCJ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Y3IP1 (Fragment) n=1 Tax=Nicotiana tabacum RepID=E5KCJ9_TOBAC	SoyBase	E_val: 1.00E-37	ISS

Expression Patterns of Glyma16g14720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g14720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g094300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g14720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g14720

Limit To All Plant Sequences

>Glyma16g14720.2   sequence type=transcript   gene model=Glyma16g14720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGATTAGTTGGTTGATACTGTACTTGGACTTACTTGGTGCTAGGCTAGCTGAGTGCCACAACTAGAAAAACAAAACCAAAAGGGAACCATAGGATAGAAGCCAGTTACCGCTGTAGCAATGGCATGGTCACTCACACTGCCACCGCCTTCTTCCCTTTCTTCTTCTTCTTCTCCTTCTTTTCCCACCTTCCACCACCACCACCACTCTCTCTTTTTCAATGGAGTAGTAGCGTTCACCAGGCTCCGCCATCGCCGAAACTCGAACACCCTTTCCCATGTTCCCTCTGTGGGGAAGGAAGACACTGACCTTCGTGTCTCTTCTCTTCAGGAACAGCAACTAGGCGAAGATGACGACGGCGATGATGAACCAACTCCTCAGGACATTGAATACGTTGCCCAAATCAAAAGGGTTTTGGAGCTTCTCAGGAAAAACCGGGACATGCTTTTCGGCGAGGTCAAATTAACCATAATGATTGAAGACCCTAGAGAAGTTGAGAGAAGAAGATTACTTGGTATTGAAGATTTAGATGGCCCAACAAGAGAAGATCTAGTTGATGCCTTGGATGAAATCAATGAAGGAAAAATTCCCAAGGATAGAGCTTCTCTCCAGATGCTTGCTGAGGAATTGGCTTCATGGCCTAATCTAGAGGATGCCGTGCCTAAGAAAAAGCCCAGCAAATCTCTCTATGCAAAAGCCACTGACACTGGAATTGATCCAGAATTGGCTGCAAAGAAACTGAACATTGATTGGGATTCTGCTGCTGAAATTGAAGAGACAAATGCAGATGATGAGACAGAAGTGCCTTCAGTGGTGTGGTTTAATGATTAGCCAGTATCAGACCCTTGAAGATTCGAACGTCTATTGTGACACACATTGGGCTATGGAGCACTATACTTGGTTTCGGCTTTCCCTATTATTATAGGTATTTCAGTTGTTCTGATTTTGTTTTACAATTCCCTCCAGTAGGAAATTGCATTCCACTCAAATTCAGTGTATAATGTTACACTATATTGAAATGAGTTAGTATATCGCAATGTTCACCTAACATCATCACAAGTTTATTATTAGTCTAATTACGTTACAAAATTCATCTTTTTGAGGAAAGATGTCCATGAAAGAAAAGCCGATGGTTGTTGCAATTGATTGTTTACCGGCGGATAACACGG

Coding sequences of Glyma16g14720

Limit To All Plant Sequences

>Glyma16g14720.1   sequence type=CDS   gene model=Glyma16g14720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGGTCACTCACACTGCCACCGCCTTCTTCCCTTTCTTCTTCTTCTTCTCCTTCTTTTCCCACCTTCCACCACCACCACCACTCTCTCTTTTTCAATGGAGTAGTAGCGTTCACCAGGCTCCGCCATCGCCGAAACTCGAACACCCTTTCCCATGTTCCCTCTGTGGGGAAGGAAGACACTGACCTTCGTGTCTCTTCTCTTCAGGAACAGCAACTAGGCGAAGATGACGACGGCGATGATGAACCAACTCCTCAGGACATTGAATACGTTGCCCAAATCAAAAGGGTTTTGGAGCTTCTCAGGAAAAACCGGGACATGCTTTTCGGCGAGGTCAAATTAACCATAATGATTGAAGACCCTAGAGAAGTTGAGAGAAGAAGATTACTTGGTATTGAAGATTTAGATGGCCCAACAAGAGAAGATCTAGTTGATGCCTTGGATGAAATCAATGAAGGAAAAATTCCCAAGGATAGAGCTTCTCTCCAGATGCTTGCTGAGGAATTGGCTTCATGGCCTAATCTAGAGGATGCCGTGCCTAAGAAAAAGCCCAGCAAATCTCTCTATGCAAAAGCCACTGACACTGGAATTGATCCAGAATTGGCTGCAAAGAAACTGAACATTGATTGGGATTCTGCTGCTGAAATTGAAGAGACAAATGCAGATGATGAGACAGAAGTGCCTTCAGTGGTGGGCTATGGAGCACTATACTTGGTTTCGGCTTTCCCTATTATTATAGGTATTTCAGTTGTTCTGATTTTGTTTTACAATTCCCTCCAGTAG

>Glyma16g14720.2   sequence type=CDS   gene model=Glyma16g14720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGGTCACTCACACTGCCACCGCCTTCTTCCCTTTCTTCTTCTTCTTCTCCTTCTTTTCCCACCTTCCACCACCACCACCACTCTCTCTTTTTCAATGGAGTAGTAGCGTTCACCAGGCTCCGCCATCGCCGAAACTCGAACACCCTTTCCCATGTTCCCTCTGTGGGGAAGGAAGACACTGACCTTCGTGTCTCTTCTCTTCAGGAACAGCAACTAGGCGAAGATGACGACGGCGATGATGAACCAACTCCTCAGGACATTGAATACGTTGCCCAAATCAAAAGGGTTTTGGAGCTTCTCAGGAAAAACCGGGACATGCTTTTCGGCGAGGTCAAATTAACCATAATGATTGAAGACCCTAGAGAAGTTGAGAGAAGAAGATTACTTGGTATTGAAGATTTAGATGGCCCAACAAGAGAAGATCTAGTTGATGCCTTGGATGAAATCAATGAAGGAAAAATTCCCAAGGATAGAGCTTCTCTCCAGATGCTTGCTGAGGAATTGGCTTCATGGCCTAATCTAGAGGATGCCGTGCCTAAGAAAAAGCCCAGCAAATCTCTCTATGCAAAAGCCACTGACACTGGAATTGATCCAGAATTGGCTGCAAAGAAACTGAACATTGATTGGGATTCTGCTGCTGAAATTGAAGAGACAAATGCAGATGATGAGACAGAAGTGCCTTCAGTGGTGTGGTTTAATGATTAG

Predicted protein sequences of Glyma16g14720

Limit To All Plant Sequences

>Glyma16g14720.1   sequence type=predicted peptide   gene model=Glyma16g14720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWSLTLPPPSSLSSSSSPSFPTFHHHHHSLFFNGVVAFTRLRHRRNSNTLSHVPSVGKEDTDLRVSSLQEQQLGEDDDGDDEPTPQDIEYVAQIKRVLELLRKNRDMLFGEVKLTIMIEDPREVERRRLLGIEDLDGPTREDLVDALDEINEGKIPKDRASLQMLAEELASWPNLEDAVPKKKPSKSLYAKATDTGIDPELAAKKLNIDWDSAAEIEETNADDETEVPSVVGYGALYLVSAFPIIIGISVVLILFYNSLQ*

>Glyma16g14720.2   sequence type=predicted peptide   gene model=Glyma16g14720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWSLTLPPPSSLSSSSSPSFPTFHHHHHSLFFNGVVAFTRLRHRRNSNTLSHVPSVGKEDTDLRVSSLQEQQLGEDDDGDDEPTPQDIEYVAQIKRVLELLRKNRDMLFGEVKLTIMIEDPREVERRRLLGIEDLDGPTREDLVDALDEINEGKIPKDRASLQMLAEELASWPNLEDAVPKKKPSKSLYAKATDTGIDPELAAKKLNIDWDSAAEIEETNADDETEVPSVVWFND*

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