Glyma16g14690 - SoyBase

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Report for Sequence Feature Glyma16g14690

Feature Type:	gene_model
Chromosome:	Gm16
Start:	15583813
stop:	15587487
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g14690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44670	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF23) \| chr5:18019209-18021266 REVERSE LENGTH=519	SoyBase	E_val: 0	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
KOG4735	KOG	Extracellular protein with conserved cysteines	JGI		ISS
PTHR21461	Panther	UNCHARACTERIZED	JGI		ISS
PF01697	PFAM	Domain of unknown function	JGI		ISS
UniRef100_I1MME0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MME0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LTZ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g44670/K15C23_12 n=1 Tax=Arabidopsis thaliana RepID=Q9LTZ9_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g14690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g14690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g094100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g14690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g14690

Limit To All Plant Sequences

>Glyma16g14690.1   sequence type=CDS   gene model=Glyma16g14690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGCCAACAAGGAGAGGGAGAAGAAGTTCTTCTTTGTAGGGTCACTAGTAAACTACGCAGCTGAACTAAAGCTTCTTCTCGCAACTCTCTTCCTTCTTTGTGGTGTTGCCACTCTCCTTCAATTCCTCCCTTCGCGTTTCACCATTTCCTCCTCCGATCTCCGCTTCTGCATCTCAAGGGTGTCCCTAACACCCCCACCACCCTCTACACCCCCACCACCCTTTACATCACTTTCTACACCCCCAACACCACTCTCTTCCACCCAAAAACACCTTCCCAATGGCACCATCAAGCGTGTCTTCAACCCTCACGGCTCCGCGGCCTACAACTTCATCACCATGGGAGCATACAGAGGAGGACTCAACACCTTCGCCATCGTTGGCCTTTCTTCCAAGCCACTCCACGTTTATGGCAAACCCACCTACGTGTGTGAATGGATCCCTGATCTCCCTTCACTGCAAAACTCTTCAAAACCCATCATCACAAAAGGCCTCAAGTACCTCCCTGACTGGGGCTATGGCCACGTCTACACCGTGGTGGTAGTTAACTGCACCTTCAACGGCACCGCTGTCAATGGTGACAACACCGGTGGCAAGTTGGTGCTCCATGCTTCCACCTCAGGAGCCGGTGACACTGGCTTCAACGTCACCGACAGAATAGAGGTCCTCCATGAAGCACCGGGAGCTTTAAACGCTTCACTTTTCATGTCAAAGCCTAAGTATGACTACTTCTACTGTGGCTCTTCTCTCTATGGGAACTTAAACCCTCAGAGGGTGAGGGAGTGGATCGCTTACCACGTGAGGTTCTTCGGGCCAAAGTCGCATTTCGTGATTCATGATGCTGGTGGGGTGCATGAGGAGGTGCTTGAGGTGCTGAAGCCGTGGATGGAACTAGGGTTTGTGACATTGCAGGATATTAGGGACCAAGAGAGGTTTGATGGATACTATCATAACCAGTTCATGGTGGTCAATGATTGTCTTCATAGATACAAGTTCATGGCCAAGTGGATGTTCTTTTTCGATGTTGATGAGTACATTTATGTGCCTCCTAAGACTACTATCAAGTCCGTGCTTCACTCACTTTCGGAATACGACCAGTTCACCATTGAACAGATGCCTATGAGCAGCAAGATTTGCCTCTCTGAGGATTACGGCAAAACTTACAGGAAATGGGGTTTTGAAAAGCTTGTGTATAGAGACTCAATTACAGGAATTCGTAGAGATCGAAAATATGCAGTGCAACCACGGAGTTTGTATGCAACAGGGGTGCACATGTCAATGGATCTATCAGGAAAGACAACACACAAAACTGAAGGTAGGATCAAATACTTCCACTATCATGGAACCATATCAGAAAGGAGAGAAACATGTAAAATACTCGTCAACACAACACAAGTCACCCAGAACAAAATTCCTTATGTGATGGACACCACAATGAGGGACACTGCTGGGGTAATCAAGAAATTTGAGCTCAAGATGATTGGAACAAGGTTGCAGAAGACAAGGCAATAA

Predicted protein sequences of Glyma16g14690

Limit To All Plant Sequences

>Glyma16g14690.1   sequence type=predicted peptide   gene model=Glyma16g14690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMANKEREKKFFFVGSLVNYAAELKLLLATLFLLCGVATLLQFLPSRFTISSSDLRFCISRVSLTPPPPSTPPPPFTSLSTPPTPLSSTQKHLPNGTIKRVFNPHGSAAYNFITMGAYRGGLNTFAIVGLSSKPLHVYGKPTYVCEWIPDLPSLQNSSKPIITKGLKYLPDWGYGHVYTVVVVNCTFNGTAVNGDNTGGKLVLHASTSGAGDTGFNVTDRIEVLHEAPGALNASLFMSKPKYDYFYCGSSLYGNLNPQRVREWIAYHVRFFGPKSHFVIHDAGGVHEEVLEVLKPWMELGFVTLQDIRDQERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEYIYVPPKTTIKSVLHSLSEYDQFTIEQMPMSSKICLSEDYGKTYRKWGFEKLVYRDSITGIRRDRKYAVQPRSLYATGVHMSMDLSGKTTHKTEGRIKYFHYHGTISERRETCKILVNTTQVTQNKIPYVMDTTMRDTAGVIKKFELKMIGTRLQKTRQ*

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