SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24860 | AT | Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr3:9073642-9074574 FORWARD LENGTH=310 | SoyBase | E_val: 2.00E-34 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG4282 | KOG | Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain | JGI | ISS | |
| UniRef100_B9S517 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S517_RICCO | SoyBase | E_val: 2.00E-65 | ISS |
| UniRef100_I1MMD4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMD4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g14040 not represented in the dataset |
Glyma16g14040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g093600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g14040.3 sequence type=transcript gene model=Glyma16g14040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTAAGAAGTAAAATGTAAATCCTTTGATTAAACCTAAAAAAATAAACATGAGTTGTGGCACAGTGGCAGTCTCACAGGCTGGCGCATTTACCCACCCAGCATGTCACTATCCACCATCACCCCACCACCTCCCTACTACCCTTCCACTTACCGCCACCACTTCAATCCCCGCCACCAAATGTCAACCAAACCCACCAAAACCTTTCCTTACCCTCACACCCAACCCAACCTCACGCACCCACTCCAATAATATTAACAACAACCACAACCCTTTGTTTTTGTTCCTTACACACCACACACCTTCCTCATCAATCAATGGCGACCCCCCCAAACGACGCCGCATCGACAAAGAAGCCCCAGCCCATACCATGGACCCACCAGGAGACCGTGCACCTCATCCGCGCCTACCAGGAGAAGTGGTATGCCCTTAAGCGGGGCCCACTCCGCCACAACCAGTGGGAGGAGGTCGCCGTCGTTGTCGCCGCCCGCTGCGGCTATGACCTCGCCCACCCCGCTAAGTCCGCCCTCCAGTGCCGCCACAAGATGGAAAAGCTCCGCCAGCGCCACCGTGCCGAGAAGAAGCAACAACACACCGCGGCCGCCCTCCGCCCTGGCGCGTGGCAGTACAACACCCTCATGGACGACCTCGAGCGCGGCCCCCTCCCCATCTCCGCCCTCGCCCCTCTCGACACCTTTGAAGAAGAAGACGAAAACAACGACGACACCATTGACGATCGAAACGACTATGATGGCGACGGGAGTTTTATTAACATCAAGTCGAAGAGTATTAACTGTATCCTCAGCGAGAGGCCTGTGAGAATGAGAAGCAACAAAAGAGGGTTTTTGAGAGAGCACGTTGTTGTTAAAGAAGAAGAGGAGAATGAAAACGAAGACGACGACGTTTTGGGGTTGTCGACGGAGATGAGGGCTTTCGCGGAGAGGTTTATTGGGATGGAGAGTTTGAAGATGGAGATGATGAAGGAGACGGAGAGGTGTAGGTTGGAGATGGAGAAGAAGCGGATCCAGATGATTCTGGAAACGCAAAGGAGGATCGTTGATTCCATTGGGAGGGCGTTTGGGTCTAACAAGAGGATCAAGATTACTCAACAAAACTGAAAAGGATTGTGAAATATAATGATCGAAATAAGCTCTGATTGGTTTCTATCGAAGAAGAGTCTACAAAACCAGTTGCACAGTGCACTGCAAGTTATTTATTCTATTTATTGTTGCATTTGAAGTCTTTACTACTCACCTAAATTAGGGTAAGTTAATTTTTTGGCATTAGTTTCTTAAGACTAATGATCTTGTAGCTTGATTGACTTGGTTACCAATGATCTTGTAGCTTGATTGACTTGGTGCCTTCTGATCCAGTTTCTTAAGACTAGGGTGTAACAATGCTGTTAGTGGTTCAAGCCTCCATTAACCCACCTATTCTGCATTTTTTGTCTATATATTGCACTTATTAGTGAGGAATGGTCAAAATTCCTCATAAGATTTTTTTCAGTATCACACATGCATAATGCTGATTATTTTGGCTCCAAGACAACTAGAGACATGACAAAACTGGTGTTCTGTCTAACTAACTGCAATATGGTACCAACTATGACCAAACTTTCTAGATATCCAAGCAGTCTTGACATTTTCACCATGTATTTTGATATTGCTAATTTGAAATATCTGATTCTCTAAAGGTCTTTGGTCAACCCTTCTGGTTATTTTGTCATGTAGATTATTCCTTGGTATGCAGCAATGGCCATCTGACATTAATCC
>Glyma16g14040.2 sequence type=CDS gene model=Glyma16g14040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACCCCCCCAAACGACGCCGCATCGACAAAGAAGCCCCAGCCCATACCATGGACCCACCAGGAGACCGTGCACCTCATCCGCGCCTACCAGGAGAAGTGGTATGCCCTTAAGCGGGGCCCACTCCGCCACAACCAGTGGGAGGAGGTCGCCGTCGTTGTCGCCGCCCGCTGCGGCTATGACCTCGCCCACCCCGCTAAGTCCGCCCTCCAGTGCCGCCACAAGATGGAAAAGCTCCGCCAGCGCCACCGTGCCGAGAAGAAGCAACAACACACCGCGGCCGCCCTCCGCCCTGGCGCGTGGCAGTACAACACCCTCATGGACGACCTCGAGCGCGGCCCCCTCCCCATCTCCGCCCTCGCCCCTCTCGACACCTTTGAAGAAGAAGACGAAAACAACGACGACACCATTGACGATCGAAACGACTATGATGGCGACGGGAGTTTTATTAACATCAAGTCGAAGAGTATTAACTGTATCCTCAGCGAGAGGCCTGTGAGAATGAGAAGCAACAAAAGAGGGTTTTTGAGAGAGCACGTTGTTGTTAAAGAAGAAGAGGAGAATGAAAACGAAGACGACGACGTTTTGGGGTTGTCGACGGAGATGAGGGCTTTCGCGGAGAGGTTTATTGGGATGGAGAGTTTGAAGATGGAGATGATGAAGGAGACGGAGAGGTGTAGGTTGGAGATGGAGAAGAAGCGGATCCAGATGATTCTGGAAACGCAAAGGAGGATCGTTGATTCCATTGGGAGGGCGTTTGGGTCTAACAAGAGGATCAAGATTACTCAACAAAACTGA >Glyma16g14040.3 sequence type=CDS gene model=Glyma16g14040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACCCCCCCAAACGACGCCGCATCGACAAAGAAGCCCCAGCCCATACCATGGACCCACCAGGAGACCGTGCACCTCATCCGCGCCTACCAGGAGAAGTGGTATGCCCTTAAGCGGGGCCCACTCCGCCACAACCAGTGGGAGGAGGTCGCCGTCGTTGTCGCCGCCCGCTGCGGCTATGACCTCGCCCACCCCGCTAAGTCCGCCCTCCAGTGCCGCCACAAGATGGAAAAGCTCCGCCAGCGCCACCGTGCCGAGAAGAAGCAACAACACACCGCGGCCGCCCTCCGCCCTGGCGCGTGGCAGTACAACACCCTCATGGACGACCTCGAGCGCGGCCCCCTCCCCATCTCCGCCCTCGCCCCTCTCGACACCTTTGAAGAAGAAGACGAAAACAACGACGACACCATTGACGATCGAAACGACTATGATGGCGACGGGAGTTTTATTAACATCAAGTCGAAGAGTATTAACTGTATCCTCAGCGAGAGGCCTGTGAGAATGAGAAGCAACAAAAGAGGGTTTTTGAGAGAGCACGTTGTTGTTAAAGAAGAAGAGGAGAATGAAAACGAAGACGACGACGTTTTGGGGTTGTCGACGGAGATGAGGGCTTTCGCGGAGAGGTTTATTGGGATGGAGAGTTTGAAGATGGAGATGATGAAGGAGACGGAGAGGTGTAGGTTGGAGATGGAGAAGAAGCGGATCCAGATGATTCTGGAAACGCAAAGGAGGATCGTTGATTCCATTGGGAGGGCGTTTGGGTCTAACAAGAGGATCAAGATTACTCAACAAAACTGA
>Glyma16g14040.2 sequence type=predicted peptide gene model=Glyma16g14040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPPNDAASTKKPQPIPWTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVVVAARCGYDLAHPAKSALQCRHKMEKLRQRHRAEKKQQHTAAALRPGAWQYNTLMDDLERGPLPISALAPLDTFEEEDENNDDTIDDRNDYDGDGSFINIKSKSINCILSERPVRMRSNKRGFLREHVVVKEEEENENEDDDVLGLSTEMRAFAERFIGMESLKMEMMKETERCRLEMEKKRIQMILETQRRIVDSIGRAFGSNKRIKITQQN* >Glyma16g14040.3 sequence type=predicted peptide gene model=Glyma16g14040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPPNDAASTKKPQPIPWTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVVVAARCGYDLAHPAKSALQCRHKMEKLRQRHRAEKKQQHTAAALRPGAWQYNTLMDDLERGPLPISALAPLDTFEEEDENNDDTIDDRNDYDGDGSFINIKSKSINCILSERPVRMRSNKRGFLREHVVVKEEEENENEDDDVLGLSTEMRAFAERFIGMESLKMEMMKETERCRLEMEKKRIQMILETQRRIVDSIGRAFGSNKRIKITQQN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
