Report for Sequence Feature Glyma16g13820
Feature Type: gene_model
Chromosome: Gm16
Start: 14845662
stop: 14849934
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g13820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G13630 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF593 | chr4:7934093-7936029 REVERSE LENGTH=569
SoyBase E_val: 2.00E-50 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF04576 PFAM
Protein of unknown function, DUF593
JGI ISS
UniRef100_Q9MAT7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F13M7.12 protein n=1 Tax=Arabidopsis thaliana RepID=Q9MAT7_ARATH
SoyBase E_val: 1.00E-22 ISS
UniRef100_UPI000233E7A3 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E7A3 related cluster n=1 Tax=unknown RepID=UPI000233E7A3
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g13820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma16g13820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g093400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g13820
Coding sequences of Glyma16g13820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g13820.1 sequence type=CDS gene model=Glyma16g13820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCACAGGAGACTCACTCTTGGACGTTGGGAGGACTTATTGGTGCCTTTATTGACCTTGTTTTAGCTTATTTCTTGTTGTGTGGATCAGCTTTTGCTTTCTTTGTGTCCAAATGGTTTAGGTTTTTAGGATTTTGTTTGCCTTGTCCCTGCAAGGGGACTTTTGGGTTTAGGAGTAGCCGTTTCTGTGTGCATAGATTGATGTTCCAATGGCCTTCAAGGAAGATATGTTCCATTCAAGTTATGGCGGTTAAGAGATTCCCTTTTGATCTGGTTCGGGTTAAGGATCATTCACGCAGTGCTAATGATAGAGTGGCTGCTGAGAGAACACATGATAATAGGGTTGTTGAGTTGGAAGATGAGGCATCTTGCAGTTCATGTTCAGCACCGCGTTTGCTTCCCTTTGTTGATAGGGAAAACGTGTATGATGCTAAGGGGAAGAGAGTCATGAGTATGAAACGAAGGTCTGGAGTTCGGCGCCGGAGGAGGGCTAGTTATGATTGTACGAAAGTCTCTTCAGCTGTTCCTTCTGAAAATCTGCAATCTGATGTTGTCCTCACTCCTTGTTCGCCTTGTGATGGCAGTATAATTAGAGATAAAACCAGTGCAGGCATAAGTCCTACCTCGGGGAAAGGAGTTAGTGTAGATGATGCCGAAGTTGATCAAGCTGACCATGATTTGGATGAAAAGACCTGTCATAGTTATGAATTTAGTGGATCAATGGTTGATAGTCCAGGACAGGACAAATATTTATTGTCATTGGAACACTACATAAATAATGTGTGTGACCATGTCCAAATTGTTGGTAATGGAGAGGATCGTATCAAGATGTTAGAAAATGCACTTGAAGAAGAGAAAGCTGCCTATGCTGCACTTTACCTTGAGCTAGAGAAGGAGAGAGCTGCAGCTGCTACTGCTGCTGATGAAACCATGGCTATGATATCACGCCTGCAGGAGGAGAAGGCGTCAATGGAATTGGAAATGAGGCAATACCTGAGGATGATAGAAGAAAGAGTTGCTTATGATGAAGAAGAGATGGATATTCTGCAAGAGATCCTTATAAGAAGGGAAAGGGAGAACCACTTTTTGGAAAAGGAACTTGCAACTTACAGGCAGATGGATTCAAAAGGTAGTGACCAATCATATGGCAAGGCAAAGGTGCAACATGATCAATGGGGACAAAAGCCTCCAATTTCAGTTGGAACATATGAAAATCGAAGCACCATATCATTTGTTAAGAAAGATGAAATAAAAGATATTTCTTCTAATTATATGGTTGCTCAGACTTGCATCAATATGAAAGACGGACAAGAGCTGGAGAAAAACACAGAATGTAAGGATCAAGTGCATAACAACCTGCATAGCTCCTTTTATGATACTGATCTGGATGTTTTTGATGTCCATGTCATTAATGACAACATAAAACTAAAGGAAGAGGAAAATGAAAAGTTAAGTAGCTCTTCATTGAGTACTGTTACAAATGAACTCACAAATAGATATCTTGAATTTGGAAGTCAAACAGTACAGAGCAGTGATGTATTAAGCAATCGTCGAAGGACAGATAAGCCAGAAAATGGTAATAGTGTTGATGGCCCCACGAGTCAGTTATCCATGTTCTCAAACACAAGACGCAAAACTTTGTCTTTAGATTCTGGAAGGGATTCTTCCAGTGCAGTTGAAAATGAGAAGTTAAAGATTGGCAATGAGATTGAAATTCTCGGAGAAAGGTTGAGGATGCTAAAACATGAAAAGGAAAAATTGTCTTTCTTTGCAGAGAACGGAGAAAGTGAAAAGGGCCAGCTGAAGCTTCTGGAGGAGATAGCAAACCATCTCCAAAGGATTAAACAGACAAGAAACCCTGTGCGTGGGGCTTCCTTACCCCCTTCCTCATCTAAGGTGAGCTTGAGGAAAAGACGCTGCCAAAGTGTGACAATGGAGACATGTGAAAGCAGCTAA
Predicted protein sequences of Glyma16g13820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g13820.1 sequence type=predicted peptide gene model=Glyma16g13820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASQETHSWTLGGLIGAFIDLVLAYFLLCGSAFAFFVSKWFRFLGFCLPCPCKGTFGFRSSRFCVHRLMFQWPSRKICSIQVMAVKRFPFDLVRVKDHSRSANDRVAAERTHDNRVVELEDEASCSSCSAPRLLPFVDRENVYDAKGKRVMSMKRRSGVRRRRRASYDCTKVSSAVPSENLQSDVVLTPCSPCDGSIIRDKTSAGISPTSGKGVSVDDAEVDQADHDLDEKTCHSYEFSGSMVDSPGQDKYLLSLEHYINNVCDHVQIVGNGEDRIKMLENALEEEKAAYAALYLELEKERAAAATAADETMAMISRLQEEKASMELEMRQYLRMIEERVAYDEEEMDILQEILIRRERENHFLEKELATYRQMDSKGSDQSYGKAKVQHDQWGQKPPISVGTYENRSTISFVKKDEIKDISSNYMVAQTCINMKDGQELEKNTECKDQVHNNLHSSFYDTDLDVFDVHVINDNIKLKEEENEKLSSSSLSTVTNELTNRYLEFGSQTVQSSDVLSNRRRTDKPENGNSVDGPTSQLSMFSNTRRKTLSLDSGRDSSSAVENEKLKIGNEIEILGERLRMLKHEKEKLSFFAENGESEKGQLKLLEEIANHLQRIKQTRNPVRGASLPPSSSKVSLRKRRCQSVTMETCESS*