SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18070 | AT | Annotation by Michelle Graham. TAIR10: phosphoglucosamine mutase-related | chr5:5981117-5982787 FORWARD LENGTH=556 | SoyBase | E_val: 0 | ISS |
| GO:0000719 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoreactive repair | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylglucosamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV | SoyBase | N/A | ISS |
| GO:0019255 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose 1-phosphate metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004610 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoacetylglucosamine mutase activity | SoyBase | N/A | ISS |
| GO:0004614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoglucomutase activity | SoyBase | N/A | ISS |
| GO:0016868 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity, phosphotransferases | SoyBase | N/A | ISS |
| KOG2537 | KOG | Phosphoglucomutase/phosphomannomutase | JGI | ISS | |
| PTHR22573 | Panther | PHOSPHOHEXOMUTASE FAMILY MEMBER | JGI | ISS | |
| PTHR22573:SF3 | Panther | PHOSPHOGLUCOMUTASE | JGI | ISS | |
| PF02878 | PFAM | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | JGI | ISS | |
| PF02880 | PFAM | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | JGI | ISS | |
| UniRef100_G7JZT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoacetylglucosamine mutase n=1 Tax=Medicago truncatula RepID=G7JZT7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MMD0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMD0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g13610 not represented in the dataset |
Glyma16g13610 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g093300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g13610.3 sequence type=CDS gene model=Glyma16g13610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACGAAGAACAACAGTGTTTGCTTCTCAGCTCAGCTTCTCACTTTTGGCCCCCCAAAGGAGTGAAGCTATCGTACGGCACTGGGGGCTTCAGAGCCGATGCATCACTTCTCCAATCGACGGTGTACAGAGTGGGAATCCTTGCAGCCCTTAGATCGCTCAAGACTCGCTCCGTCATTGGTCTCATGATCACCGCCTCACACAACAAAGTCTCCGATAATGGAGTCAAAATCGCTTACGCAAGTGGCGGCATGCTCTCTCAGCATTGGGAACCCTTCGTCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTGTTGATAAATGAATTCGTGGAGAAAGAAGGAATCTCGGTGGATGGGGACTGGCAAGTCGAAGTGCTTTTGGGGAGAGACACGAGACCAAGTGGAGAGATGCTTTGCTTCAAGCAGCTAAACAGGCATGAGCAAGTTGGGTTGAAGACAACCAAACACCCCAAAAATCGTGACGTTGTGGCTGAAATCACTGGTGTCACTTCAATTGTTGGAGCTGTTGCGACGGATATGGGAATCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAGGTGCTTAGTGGATTTGATCCCAGCTGAAAAATGTAAGTTTGATGGGGTGAACGACAAAGTGGTCGTGGATGGATCTAATGGGGTTCGAAACAGCAGTGAAGATGGAGGAGTACTGAATGATGGAGTTGGTGCTGATTATGTGCAAAAAGAGAAGGTTCTTCCAAACAACTTTGGTTCTAAAGACACTGGGATAAGGTGTGTTAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTATTGTGCCACCTAAAAGCAGTGGTAGGATTGACCTTGTTGATGGGGACAAGATACTATCCCTGTTTGCCTTATTTATTAGGGAGCAACTAAGCTTTCTTAATGAGAAAGAAGACATGAAAAATTGCCACCAAGCCCATGTTGGTGTCATACAGACTGCTTATGCAAATGGGGCATCTACTAATTACCTTAAACTGTTGGGACTTGAAGTCAATTTTACTCCAACTGGAGTGAAATATCTGCATGAAAAAGCCACCGAATTTGATATTGGTATCTACTTTGAGGCAAATGGCCATGGAACTGTCTTATTTTCAGAATCTTTCATAGAGTCGTTGGAGGCTAGAACTAATGAGATTTCTTTAGGATCCAAAGGTTCAGAAGGGGAAAAAGCTGCTCTGAGATTATTGGCTCTTAGTAAGTTGATCAATCAAGCTGTTGGAGATGCTTTGAGTGGATTTCTCTTGGTGGAAGTCATATTACAGCATATGGGATGGTCAATAAATAAATGGAATGAACTTTATCATGATTTACCCAGCAAGCAGCTCAAGGTCAAAGTTGCTGACAGAACGGCTGTTTTGGTAGCCTTTTTTTCAGAAGGCAACAGTGCATTGTCACTGTCATAG
>Glyma16g13610.3 sequence type=predicted peptide gene model=Glyma16g13610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNEEQQCLLLSSASHFWPPKGVKLSYGTGGFRADASLLQSTVYRVGILAALRSLKTRSVIGLMITASHNKVSDNGVKIAYASGGMLSQHWEPFVDALANAPSPQHLLLLINEFVEKEGISVDGDWQVEVLLGRDTRPSGEMLCFKQLNRHEQVGLKTTKHPKNRDVVAEITGVTSIVGAVATDMGILTTPQLHWMVRARNKGMKASEQDYFEQLSSSFRCLVDLIPAEKCKFDGVNDKVVVDGSNGVRNSSEDGGVLNDGVGADYVQKEKVLPNNFGSKDTGIRCVSLDGDADRLVYFIVPPKSSGRIDLVDGDKILSLFALFIREQLSFLNEKEDMKNCHQAHVGVIQTAYANGASTNYLKLLGLEVNFTPTGVKYLHEKATEFDIGIYFEANGHGTVLFSESFIESLEARTNEISLGSKGSEGEKAALRLLALSKLINQAVGDALSGFLLVEVILQHMGWSINKWNELYHDLPSKQLKVKVADRTAVLVAFFSEGNSALSLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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