SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19040 | AT | Annotation by Michelle Graham. TAIR10: ENHANCED DISEASE RESISTANCE 2 | chr4:10431799-10437171 REVERSE LENGTH=718 | SoyBase | E_val: 2.00E-98 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005543 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid binding | SoyBase | N/A | ISS |
| GO:0008289 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipid binding | SoyBase | N/A | ISS |
| PTHR12136 | Panther | STEROIDOGENIC ACUTE REGULATORY (STAR) | JGI | ISS | |
| PTHR12136:SF13 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07059 | PFAM | Protein of unknown function (DUF1336) | JGI | ISS | |
| UniRef100_G7K853 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Kinase-START n=1 Tax=Medicago truncatula RepID=G7K853_MEDTR | SoyBase | E_val: 2.00E-119 | ISS |
| UniRef100_UPI00023377F9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023377F9 related cluster n=1 Tax=unknown RepID=UPI00023377F9 | SoyBase | E_val: 1.00E-152 | ISS |
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Glyma16g13601 not represented in the dataset |
Glyma16g13601 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g092900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g13601.2 sequence type=transcript gene model=Glyma16g13601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAGAATTAATTTTTGTTTCTACTGATTGATGCATCTCATGTATAGTTTTCTTTATGGTTCTGTTTTTCTTAAAACCTCGAAATGGGAGGCCCAGGACACAAGTCCAGCATCTTATGCAGATTGATCTGAAGGAGGGATGGGGTGTGGGTTACTTGTCATCTTTTCAGCAGTATTGTGTCCGTCAAATGTTAAATAGTGTAGCTGGTTTACGTGAATGGTTTGCCCAATCAGATGAAAGAAATGCTCATCCAAGAATTCCTGTCATGGTTAATTTGTCCTCAACAGCTGTTTCTTCAAAGAAGAATCAGAAGCCAAATGATTTTTCTATCAATCCTACTTCTCTTGATCAAATGAATGCTACAAGCAGAAGTTCTGCCTTGATAGATGAATATTTTGATGATGAAGAAGATTTTCAAATAGCAGAACCTGAACAAGAGGCATACCAAATTGGTCTTGAGAATGATGTGAGAAAAACAGCCTTGGAAGAAGAACCGGCACATGAAATTGACTTTTCTTCCTTTTCGGGCAATTTGCGCCGAGATGACCGTGATAATGCTCGTGACTGCTGGAAAATTTCTGATGGAAACAACTTCAAAGTCAGAAGCAAGCATTATTGCTATGAAAAAACAAAGGTTCCTGCTGGAAAACATATGCTGGACCTTGTTGCTGTTGATTGGTTTATAGACTCAAAAAGAATGGACCATGTGGCTAGGCGTCATGGTTGTGCGGAGCAAGTTGCTTCAGAAAAAGGATTTTTCTCCATTGTTCTTAATCTTCAAGTGAGTTCGTTTCTTCATGTGACTGACTCAACTACTCAACTTTAAACTTCAAAGGTTTAGAATTAGAAGTTAACAAATGCATTATTTACAAAATTTGATAATTAAATAAATTTGATATTTAATTGAATGATGTATTTAGATGTTTATTATAATGATTAAAAATTAAATAAATATGATATTTAATTGAATGATGTATTTAGATGTTTTTTATAACAATTGATAATTAAATAAATTTGATATTGTTTT
>Glyma16g13601.1 sequence type=CDS gene model=Glyma16g13601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTGTTTTTCTTAAAACCTCGAAATGGGAGGCCCAGGACACAAGTCCAGCATCTTATGCAGATTGATCTGAAGGAGGGATGGGGTGTGGGTTACTTGTCATCTTTTCAGCAGTATTGTGTCCGTCAAATGTTAAATAGTGTAGCTGGTTTACGTGAATGGTTTGCCCAATCAGATGAAAGAAATGCTCATCCAAGAATTCCTGTCATGGTTAATTTGTCCTCAACAGCTGTTTCTTCAAAGAAGAATCAGAAGCCAAATGATTTTTCTATCAATCCTACTTCTCTTGATCAAATGAATGCTACAAGCAGAAGTTCTGCCTTGATAGATGAATATTTTGATGATGAAGAAGATTTTCAAATAGCAGAACCTGAACAAGAGGCATACCAAATTGGTCTTGAGAATGATGTGAGAAAAACAGCCTTGGAAGAAGAACCGGCACATGAAATTGACTTTTCTTCCTTTTCGGGCAATTTGCGCCGAGATGACCGTGATAATGCTCGTGACTGCTGGAAAATTTCTGATGGAAACAACTTCAAAGTCAGAAGCAAGCATTATTGCTATGAAAAAACAAAGAAGGTTCCTGCTGGAAAACATATGCTGGACCTTGTTGCTGTTGATTGGTTTATAGACTCAAAAAGAATGGACCATGTGGCTAGGCGTCATGGTTGTGCGGAGCAAGTTGCTTCAGAAAAAGGATTTTTCTCCATTGTTCTTAATCTTCAAGTGAGTTCGTTTCTTCATGTGACTGACTCAACTACTCAACTTTAA >Glyma16g13601.2 sequence type=CDS gene model=Glyma16g13601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTGTTTTTCTTAAAACCTCGAAATGGGAGGCCCAGGACACAAGTCCAGCATCTTATGCAGATTGATCTGAAGGAGGGATGGGGTGTGGGTTACTTGTCATCTTTTCAGCAGTATTGTGTCCGTCAAATGTTAAATAGTGTAGCTGGTTTACGTGAATGGTTTGCCCAATCAGATGAAAGAAATGCTCATCCAAGAATTCCTGTCATGGTTAATTTGTCCTCAACAGCTGTTTCTTCAAAGAAGAATCAGAAGCCAAATGATTTTTCTATCAATCCTACTTCTCTTGATCAAATGAATGCTACAAGCAGAAGTTCTGCCTTGATAGATGAATATTTTGATGATGAAGAAGATTTTCAAATAGCAGAACCTGAACAAGAGGCATACCAAATTGGTCTTGAGAATGATGTGAGAAAAACAGCCTTGGAAGAAGAACCGGCACATGAAATTGACTTTTCTTCCTTTTCGGGCAATTTGCGCCGAGATGACCGTGATAATGCTCGTGACTGCTGGAAAATTTCTGATGGAAACAACTTCAAAGTCAGAAGCAAGCATTATTGCTATGAAAAAACAAAGGTTCCTGCTGGAAAACATATGCTGGACCTTGTTGCTGTTGATTGGTTTATAGACTCAAAAAGAATGGACCATGTGGCTAGGCGTCATGGTTGTGCGGAGCAAGTTGCTTCAGAAAAAGGATTTTTCTCCATTGTTCTTAATCTTCAAGTGAGTTCGTTTCTTCATGTGACTGACTCAACTACTCAACTTTAA
>Glyma16g13601.1 sequence type=predicted peptide gene model=Glyma16g13601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLFFLKPRNGRPRTQVQHLMQIDLKEGWGVGYLSSFQQYCVRQMLNSVAGLREWFAQSDERNAHPRIPVMVNLSSTAVSSKKNQKPNDFSINPTSLDQMNATSRSSALIDEYFDDEEDFQIAEPEQEAYQIGLENDVRKTALEEEPAHEIDFSSFSGNLRRDDRDNARDCWKISDGNNFKVRSKHYCYEKTKKVPAGKHMLDLVAVDWFIDSKRMDHVARRHGCAEQVASEKGFFSIVLNLQVSSFLHVTDSTTQL* >Glyma16g13601.2 sequence type=predicted peptide gene model=Glyma16g13601 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLFFLKPRNGRPRTQVQHLMQIDLKEGWGVGYLSSFQQYCVRQMLNSVAGLREWFAQSDERNAHPRIPVMVNLSSTAVSSKKNQKPNDFSINPTSLDQMNATSRSSALIDEYFDDEEDFQIAEPEQEAYQIGLENDVRKTALEEEPAHEIDFSSFSGNLRRDDRDNARDCWKISDGNNFKVRSKHYCYEKTKVPAGKHMLDLVAVDWFIDSKRMDHVARRHGCAEQVASEKGFFSIVLNLQVSSFLHVTDSTTQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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