Glyma16g13570 - SoyBase

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Report for Sequence Feature Glyma16g13570

Feature Type:	gene_model
Chromosome:	Gm16
Start:	14652981
stop:	14657098
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g13570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17609	AT	Annotation by Michelle Graham. TAIR10: HY5-homolog \| chr3:6023971-6024585 FORWARD LENGTH=149	SoyBase	E_val: 2.00E-44	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13301:SF30	Panther		JGI		ISS
PF07716	PFAM	Basic region leucine zipper	JGI		ISS
UniRef100_I1MMC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMC8_SOYBN	SoyBase	E_val: 5.00E-136	ISS
UniRef100_Q0GPF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP69 n=1 Tax=Glycine max RepID=Q0GPF3_SOYBN	SoyBase	E_val: 2.00E-135	ISS

Expression Patterns of Glyma16g13570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g13570 not represented in the dataset	Glyma16g13570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g13570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g092700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g13570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g13570

Limit To All Plant Sequences

>Glyma16g13570.1   sequence type=CDS   gene model=Glyma16g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTCCAAGACCCAGTGAGGGTAAAGCCCCTTCTCAGCTGAAAGAAGGAGTAGCACCTGCTGCTGCTGCAGCCTCATCCTCTTCTTCATGGAATAATAGGCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACGTAATGTGACAGACCCTCAATTTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAACGCTATCTTAGAAGAACGTATCTCTACTTTAATCAATGAGAACACCATGCTGCGGAAGGTTCTTATGAACGCGAGGCCAAAAACTGATGATAGCATTGAACAAAAGCAAGACCAGTTAAGTAAGAGCTAA

Predicted protein sequences of Glyma16g13570

Limit To All Plant Sequences

>Glyma16g13570.1   sequence type=predicted peptide   gene model=Glyma16g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLPRPSEGKAPSQLKEGVAPAAAAASSSSSWNNRLHTFPPLSLHNKSSKIEDSDEDMFTVPDVETTPVSVHSAATLQNSNLTQRNVTDPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAILEERISTLINENTMLRKVLMNARPKTDDSIEQKQDQLSKS*

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