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Report for Sequence Feature Glyma16g13570

Feature Type:gene_model
Chromosome:Gm16
Start:14652981
stop:14657098
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g13570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17609AT Annotation by Michelle Graham. TAIR10: HY5-homolog | chr3:6023971-6024585 FORWARD LENGTH=149 SoyBaseE_val: 2.00E-44ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI ISS
PTHR13301:SF30Panther JGI ISS
PF07716PFAM Basic region leucine zipper JGI ISS
UniRef100_I1MMC8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMC8_SOYBN SoyBaseE_val: 5.00E-136ISS
UniRef100_Q0GPF3UniRef Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP69 n=1 Tax=Glycine max RepID=Q0GPF3_SOYBN SoyBaseE_val: 2.00E-135ISS

Expression Patterns of Glyma16g13570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g13570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g092700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g13570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g13570
>Glyma16g13570.1   sequence type=CDS   gene model=Glyma16g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTCCAAGACCCAGTGAGGGTAAAGCCCCTTCTCAGCTGAAAGAAGGAGTAGCACCTGCTGCTGCTGCAGCCTCATCCTCTTCTTCATGGAATAATAGGCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACGTAATGTGACAGACCCTCAATTTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAACGCTATCTTAGAAGAACGTATCTCTACTTTAATCAATGAGAACACCATGCTGCGGAAGGTTCTTATGAACGCGAGGCCAAAAACTGATGATAGCATTGAACAAAAGCAAGACCAGTTAAGTAAGAGCTAA
Predicted protein sequences of Glyma16g13570
>Glyma16g13570.1   sequence type=predicted peptide   gene model=Glyma16g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLPRPSEGKAPSQLKEGVAPAAAAASSSSSWNNRLHTFPPLSLHNKSSKIEDSDEDMFTVPDVETTPVSVHSAATLQNSNLTQRNVTDPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAILEERISTLINENTMLRKVLMNARPKTDDSIEQKQDQLSKS*






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