Glyma16g13493 - SoyBase

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Report for Sequence Feature Glyma16g13493

Feature Type:	gene_model
Chromosome:	Gm16
Start:	14577169
stop:	14579474
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g13493

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233B1C2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B1C2 related cluster n=1 Tax=unknown RepID=UPI000233B1C2	SoyBase	E_val: 7.00E-49	ISS

Expression Patterns of Glyma16g13493

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g13493 not represented in the dataset	Glyma16g13493 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g13493 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g092300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g13493

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g13493

Limit To All Plant Sequences

>Glyma16g13493.2   sequence type=transcript   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTGTAACTGCCCACTCCCTCGCGTTTTCTCCTTCCATCAAAGGGAGTAACTGACACTTTAGTTCCTCCTTCCTCCTGCACATCTAGCTTAGTTTCTGTCTCTCTTCCCGTGTATGAGACCTTTCGTTTATGCTCTAATCAATATTGTCGCCCATAAAAATCATTCCCCAACATGATTAATGCTCCCATTAATTATTTATCCTCTTCCCGTGTCATTATTTCATATTCATGTTTTTTCCATTCCATTCTCTTTCACGAAGAACCGATTCAATATCCCCTCCTCCCTTCCTCGCCTCTTTATTTCTTTTTCCTTTGCTCCTTCATCCACTTTCGTTGTGCCGGAACGTCAAAGCTATCACTGTTCCTCAATGGCTTCCACAGGCAGGGCCATGGAAAGGCCAGAGTCGTCGCATCAAGGGGAACATGACAAGCAATTATCCAACCGCACTCATCTATAGAGATTCTATGGTTGCAATGGTTACTCAAGGAGCACATGCTGCAAATTCATTTTTGTATCGGGACAATATTTCTCAGAGTGTTTTTGCATAAACAAGGAGGGATTTTGTAAGAATAGGGTGGTAGTGCACTTAGCACTAACTTTATGTTGGATAGGATAGGATGTGGTCCTCTAATGTACCCATCCATCTTTAATTTTTTGTAATCTTTATCTAAACTCGGAAGATTAGCA

>Glyma16g13493.3   sequence type=transcript   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTGTAACTGCCCACTCCCTCGCGTTTTCTCCTTCCATCAAAGGGAGTAACTGACACTTTAGTTCCTCCTTCCTCCTGCACATCTAGCTTAGTTTCTGTCTCTCTTCCCGTGTATGAGACCTTTCGTTTATGCTCTAATCAATATTGTCGCCCATAAAAATCATTCCCCAACATGATTAATGCTCCCATTAATTATTTATCCTCTTCCCGTGTCATTATTTCATATTCATGTTTTTTCCATTCCATTCTCTTTCACGAAGAACCGATTCAATATCCCCTCCTCCCTTCCTCGCCTCTTTATTTCTTTTTCCTTTGCTCCTTCATCCACTTTCGTTGTGCCGGAACGTCAAAGCTATCACTGTTCCTCAATGGCTTCCACAGGCAGGGCCATGGAAAGGCCAGAGTCGTCGCATCAAGGGGAACATGACAAGCAATTATCCAACCGCACTCATCTATAGTAATTGTTTTACATGTGTGTTAAGTTTTCATGGTGTTTTATTCTTAAGTTGAATGCTTTGGAAGAATCAATGATTGTTAAGGAAGAGATTCAAATACAACATTGTTGAAGAGGTGAAAGTACAGTCTTGGAAGAAAGGCTTCACGTACTTTTTAGCAGTTTAGTTTTTTATCAGCGTTTAACAGCTTAGTTAGTAAATCCAAGTGCATTCCTTTGATGTATATGATAATAACATAACGTAGGGGATATGTACAGTTACAATAAGAGGTCACGTTCTGGTTTTGGTTGTTTTGTCAGTGTTTTGATAGAACAGAGGTTTTTGAGGGGTGGTTTCAGTT

Coding sequences of Glyma16g13493

Limit To All Plant Sequences

>Glyma16g13493.1   sequence type=CDS   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTTCCATTCCATTCTCTTTCACGAAGAACCGATTCAATATCCCCTCCTCCCTTCCTCGCCTCTTTATTTCTTTTTCCTTTGCTCCTTCATCCACTTTCGTTGTGCCGGAACGTCAAAGCTATCACTGTTCCTCAATGGCTTCCACAGGCAGGGCCATGGAAAGGCCAGAGTCGTCGCATCAAGGGGAACATGACAAGCAATTATCCAACCGCACTCATCTATAGATTCTATGGTTGCAATGGTTACTCAAGGAGCACATGCTGCAAATTCATTTTTGTATCGGGACAATATTTCTCAGAGTGTTTTTGCATAAACAAGGAGGGATTTTGTAAGAATAGGGTGGTAGTGCACTTAGCACTAACTTTATGTTGGATAGGATAG

>Glyma16g13493.2   sequence type=CDS   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTTCCATTCCATTCTCTTTCACGAAGAACCGATTCAATATCCCCTCCTCCCTTCCTCGCCTCTTTATTTCTTTTTCCTTTGCTCCTTCATCCACTTTCGTTGTGCCGGAACGTCAAAGCTATCACTGTTCCTCAATGGCTTCCACAGGCAGGGCCATGGAAAGGCCAGAGTCGTCGCATCAAGGGGAACATGACAAGCAATTATCCAACCGCACTCATCTATAGAGATTCTATGGTTGCAATGGTTACTCAAGGAGCACATGCTGCAAATTCATTTTTGTATCGGGACAATATTTCTCAGAGTGTTTTTGCATAA

>Glyma16g13493.3   sequence type=CDS   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTTCCATTCCATTCTCTTTCACGAAGAACCGATTCAATATCCCCTCCTCCCTTCCTCGCCTCTTTATTTCTTTTTCCTTTGCTCCTTCATCCACTTTCGTTGTGCCGGAACGTCAAAGCTATCACTGTTCCTCAATGGCTTCCACAGGCAGGGCCATGGAAAGGCCAGAGTCGTCGCATCAAGGGGAACATGACAAGCAATTATCCAACCGCACTCATCTATAGTAATTGTTTTACATGTGTGTTAAGTTTTCATGGTGTTTTATTCTTAAGTTGA

Predicted protein sequences of Glyma16g13493

Limit To All Plant Sequences

>Glyma16g13493.1   sequence type=predicted peptide   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFPFHSLSRRTDSISPPPFLASLFLFPLLLHPLSLCRNVKAITVPQWLPQAGPWKGQSRRIKGNMTSNYPTALIYRFYGCNGYSRSTCCKFIFVSGQYFSECFCINKEGFCKNRVVVHLALTLCWIG*

>Glyma16g13493.2   sequence type=predicted peptide   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFPFHSLSRRTDSISPPPFLASLFLFPLLLHPLSLCRNVKAITVPQWLPQAGPWKGQSRRIKGNMTSNYPTALIYRDSMVAMVTQGAHAANSFLYRDNISQSVFA*

>Glyma16g13493.3   sequence type=predicted peptide   gene model=Glyma16g13493   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFPFHSLSRRTDSISPPPFLASLFLFPLLLHPLSLCRNVKAITVPQWLPQAGPWKGQSRRIKGNMTSNYPTALIYSNCFTCVLSFHGVLFLS*

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