Glyma16g13470 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g13470

Feature Type:	gene_model
Chromosome:	Gm16
Start:	14559882
stop:	14561631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g13470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16760	AT	Annotation by Michelle Graham. TAIR10: Inositol 1,3,4-trisphosphate 5/6-kinase family protein \| chr5:5509890-5510849 FORWARD LENGTH=319	SoyBase	E_val: 1.00E-119	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0052746	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphorylation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
GO:0047325	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol tetrakisphosphate 1-kinase activity	SoyBase	N/A	ISS
GO:0052725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol-1,3,4-trisphosphate 6-kinase activity	SoyBase	N/A	ISS
GO:0052726	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol-1,3,4-trisphosphate 5-kinase activity	SoyBase	N/A	ISS
PTHR14217	Panther	INOSITOL 1,3,4-TRIPHOSPHATE 5/6 KINASE	JGI		ISS
PF05770	PFAM	Inositol 1, 3, 4-trisphosphate 5/6-kinase	JGI		ISS
UniRef100_G7LH14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inositol-tetrakisphosphate 1-kinase n=1 Tax=Medicago truncatula RepID=G7LH14_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MMC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MMC4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g13470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g13470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g092200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g13470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g13470

Limit To All Plant Sequences

>Glyma16g13470.2   sequence type=CDS   gene model=Glyma16g13470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAAGAGATTCGGCGTGATAGGGTACGCTCTGGCGCCGAAGAAGCAGAACAGCTTCATCCGCGACTCGCTGGTGAGCCTAGCGAAATCGCGAGGGATTGAGCTCGTGCGCGTGGACTCCGACAAGCCCCTCGCGGATCAGGGCCCCTTCGACTGCGTCCTCCACAAGCTCTACGGCGACGACTGGAAGCGCCAGCTCCAGGAATTCCACACCCTCTACCCAAACGCCGTCATCCTCGACGCCCCCGAGGCGATCGAGCGCCTCCACAACCGAATCTCGATGCTGCAGGTCGTGTCGGAGCTCCGAATTGAGGACCGACCCGAGACCTTTGGGATCCCCAAGCAGATTGTGATATACGACAAGGCCACCCTCCTGGACCCGCAGGCCTGGGAGAGCCTCAAGTTTCCCGTGATAGCGAAGCCTCTCGTTGCCGACGGCAGCGCCAAGTCGCACAAGATGGCGCTCGTGTTCACGCGCGACGCACTGAACAAGCTCAAGCCGCCGATCGTGCTGCAGGAGTTCGTGAACCACGGTGGCGTGATCTTCAAGGTGTACGTGGTGGGCGAGCACGTGCGCTGCGTGAAGCGCAAGTCCCTCCCCGACGTGTCCGACGAGGAGAAGGCGCTCGGCGGCGTTTCCGAGGACCTGATGTCGTTCTCGCAGGTCTCCAACCTCGCCACCGTGAACGACTGCGACGGCTATTACCGTTTGATGCATCTCGACGACGACACCGAAATGCCCCCCGACGCCTTCGTCGTCGACATCGCTGGGGGCCTCAGGCGCGCCCTCAAGCTCAACCTCTTCAATTTCGATGTCATAAGAGACGCTCGATACGGGAACCGTTATCTTATCATTGATATCAACTATTTCCCTGGGTACGCCAAAATGCCCGGCTACGAGGCCGTTTTGACCCAGTTTTTCTGCGAAGTAATGCTCAAGAAGAAACAGCAAGAGGAACAACAGCAAGAAGAGGGTAACGCTCCTAAGGAGAAAGAGGAATCTCTTCAAGCTTGA

Predicted protein sequences of Glyma16g13470

Limit To All Plant Sequences

>Glyma16g13470.2   sequence type=predicted peptide   gene model=Glyma16g13470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKRFGVIGYALAPKKQNSFIRDSLVSLAKSRGIELVRVDSDKPLADQGPFDCVLHKLYGDDWKRQLQEFHTLYPNAVILDAPEAIERLHNRISMLQVVSELRIEDRPETFGIPKQIVIYDKATLLDPQAWESLKFPVIAKPLVADGSAKSHKMALVFTRDALNKLKPPIVLQEFVNHGGVIFKVYVVGEHVRCVKRKSLPDVSDEEKALGGVSEDLMSFSQVSNLATVNDCDGYYRLMHLDDDTEMPPDAFVVDIAGGLRRALKLNLFNFDVIRDARYGNRYLIIDINYFPGYAKMPGYEAVLTQFFCEVMLKKKQQEEQQQEEGNAPKEKEESLQA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain