Report for Sequence Feature Glyma16g13400
Feature Type: gene_model
Chromosome: Gm16
Start: 14375269
stop: 14380501
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g13400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G32330 AT
Annotation by Michelle Graham. TAIR10: heat shock transcription factor A1D | chr1:11657265-11660234 REVERSE LENGTH=485
SoyBase E_val: 1.00E-161 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
KOG0627
KOG
Heat shock transcription factor
JGI ISS
PTHR10015 Panther
HEAT SHOCK TRANSCRIPTION FACTOR
JGI ISS
PTHR10015:SF7 Panther
HEAT SHOCK TRANSCRIPTION FACTOR
JGI ISS
PF00447 PFAM
HSF-type DNA-binding
JGI ISS
UniRef100_G7KDN6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Heat stress transcription factor A-1d n=1 Tax=Medicago truncatula RepID=G7KDN6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MMC1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMC1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g13400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma16g13400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g091800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g13400
Coding sequences of Glyma16g13400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g13400.1 sequence type=CDS gene model=Glyma16g13400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGGAAGAGCGAGCAGCAGCGTGGGCGGAGAAGCATCGCCAGCTCCAGCACCGGTGCCGATAACGAATGCGAACGCGCCGCCGCCTTTCTTGAGCAAGACATACGAGATGGTAGAGGACCCTTCGACGGACTCGATAGTGTCGTGGAGTCCAACGAACAACAGTTTCGTGGTTTGGAACCCTCCCGAGTTCGCCAGAGATCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAATTAAACACCTACGGATTTAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTGAGGGGTCAAAAGCACTTGCTTAAGACTATAACTCGGCGGAAACCTGCCCATGGTCATAATCAACAGGCACAGCAAGCACATGGACAGAGTTCATCTGTTGGGGCTTGTGTTGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGGCTACTGATAACCAGCTGCAGAGTATGGTTCAGCGCCTTCAAGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGTCCTGGTTTTTTAGCTCAATTTGTACAACAGCAAAATGAGAGTAGTAGACGCATAACGGAGGCAAATAAAAAACGCCGGCTTAAGCAGGAGGGTATTGGTGAAATGGAACATACTGCTGCTTCTGATGGCCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGCTGAGGCAAATGATGAAATTGGATACTTCTCGACTAGAATCTTTTAGTAATAACGCTGATAATTACTTGATTGGTGATCATTCATCATCATCCGGTGCAACGGACAGGGGAAACTCTTTGAGCCGGACTTCTGGAGTAACACTTCAAGTGGTCCCTCTGACTACAATCCAGTCTTCTCACATTCCATCTGCAACAGGGATAGGGGATGACCCTTCAACAGGAAAATCTGAGATTCTATCTACTCCTCAAGTTGTAGCCTGTGATGAAGTTACGAAAGCTCAGTACTCTAATGTAAATGTTTCGGTTGGAGAATCTAATGCACCTGCTATCCCTGTTACTCAAACAGATGAAATCATGCGGGACCTCTCTACAATACCAGACATAGTGGCAGGAAATATTCTTGATATTCCTCAAGAAAATTATATGGCACCTGAGACAGGCGGTGAAGGATATATGGATCCTACTTCATTTGGAGTGAATGTGTCATTGCCCATTGATTTTGATAGTATTTCACCTGAAGCAGACATTGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTTTGCGAACTCCAGTGTCAGAGGAGATTGATACGAATGATGCTGAAGTATTCAAGGAGAATGAGGTGCAGCCAATGGAAAATGGATTGGACAAATCACAAAATATGGACCAACTTACTGAGCAGATGGGCCTACTTTCTTCTGATGCCAAAAGAATTTGA
Predicted protein sequences of Glyma16g13400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g13400.1 sequence type=predicted peptide gene model=Glyma16g13400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDGRASSSVGGEASPAPAPVPITNANAPPPFLSKTYEMVEDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGHNQQAQQAHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQSMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESSRRITEANKKRRLKQEGIGEMEHTAASDGQIVKYQPLINEAAKAMLRQMMKLDTSRLESFSNNADNYLIGDHSSSSGATDRGNSLSRTSGVTLQVVPLTTIQSSHIPSATGIGDDPSTGKSEILSTPQVVACDEVTKAQYSNVNVSVGESNAPAIPVTQTDEIMRDLSTIPDIVAGNILDIPQENYMAPETGGEGYMDPTSFGVNVSLPIDFDSISPEADIDDLLNNPHFWDDILRTPVSEEIDTNDAEVFKENEVQPMENGLDKSQNMDQLTEQMGLLSSDAKRI*