Glyma16g13365 - SoyBase

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Report for Sequence Feature Glyma16g13365

Feature Type:	gene_model
Chromosome:	Gm16
Start:	14329088
stop:	14346589
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g13365

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26330	AT	Annotation by Michelle Graham. TAIR10: DNA binding \| chr1:9107625-9113520 FORWARD LENGTH=1189	SoyBase	E_val: 2.00E-96	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF05965	PFAM	F/Y rich C-terminus	JGI		ISS
UniRef100_Q9FZC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T1K7.29 protein n=2 Tax=Arabidopsis thaliana RepID=Q9FZC0_ARATH	SoyBase	E_val: 8.00E-98	ISS
UniRef100_UPI000233E79B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E79B related cluster n=1 Tax=unknown RepID=UPI000233E79B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g13365

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g13365 not represented in the dataset	Glyma16g13365 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g13365 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g091700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g13365

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g13365

Limit To All Plant Sequences

>Glyma16g13365.1   sequence type=CDS   gene model=Glyma16g13365   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGACTCGAAGCGCTGAGAAAGCCGCGCAAGTAGATGCGGAGGACAGAACCGATGGCCTCGAAATAATTTCCATCGGTTCCCTCTACAAAGGATCCTGGGATAAGAAGTACTGGACCACCTCTAGGGGAAAAGATCGGTATCCATATCCAGTTGGTTATCAAGCTGTTAGAGCTTATAACGGGACCACTTATAAGATGGAAATTTGTGAAGGTGTCAATGGCCCTAGATTTTTGATTTCTTCTGATGATGGGAGTTCATCTTCTGGGAAAACTCCTGACCAAGCATGGGAGGAGTTTCAGAAGAAAGGTTGCCCACGAATCAAGATTTGGCATGGGAAGAGACTTTCATCTAAGATGGATGGCTTGGAGCTTTTTGGGTTCAAAAATCAGTTTATCCAGAGGTTGCTCCGGGAACTGGTGACAGATGTAAATGGAATAGCAGAGCGGAGCTTGGTATCCCCAAACATTTGTGATGGGGTTACTAGAACAGATCATGATAATTGCACAAATGTAGGCACATATCCTGATTTACTAACTTGCCTCGGAAAACCACGTGTTACAGGGAAGAGAAGCAGATGTGAACTTAAGAATAAAAAATTAAATGTACGAGCTAGATCTCAGTCTCCAGAACTGACATGTAGTAGACCTTCAATTGTACAGAATGAGAAGAGTCTTGGTCAGAGGAGTTCTACAATCCATTATGGTTCAGAAGTACTTGAGGTCCACAATCAGATAGGCGTGCCAGTCCTATTGCAAAGGATATCTTCCGTTTGTAAAAGCAGTAATTGCATTTCATCCAAAAATGAGTTGCTATTGAATCCTATTGAAATCTCTGATGAAAAGAAAGTGGGAGCTGTACCTTCAAGAGGATGGACTGGTTTTCTCTATTCTGAAGATTGCAAAACTACCGAACTAACTGCAGAAGATCTGCCGCAGGATGTGGAGTTGAAGATATCTAATTTGTTGGTGACACCAGAAGACAAGAAACTGATGCCTTTATGTTCTAAAGAGTCTGTTGGTTGTATTGATATTGATCTTTGTGCTCCCGATACCATAGATTTTGTGCAAGAAAATACTCATGATTCTGCCCCAAGTGAACTGGATAAATATGCTTACAATGAGACAGCTTGTCAGATCACCTCTGGAGATCTGTTAAACACAGAACATAAAGAAGTACTCAAATCTATTTCAAATCCAAGCTCTGAAAAAAGTGAGTTTGGTTCAGCTGGCCAAGATGTGGCAAAGTCAATGATGGCACTTCTGCTTCCTCAAGCAGTTCCTCTACTGAGGACTGTTTCAACAGATAAGGAGTTTACTGTTAGGCCTTCAGATATGTTGCCTTGTCAGGTGAATTCCAAGGATGAACAGAAGGGATATAGTGTGGATGTATTGCCTTCTGATGTAATAATGACAGAGGCTGCACATGGGGAACAAGGGCAAAAGATACATGGGTGTACAGACTCACATTCAAATACTCCTAATTTTGAACATATGAGGTCTATTGTTCCTGACAGTTTTGAATATAGTCAATGTGATGATTATAAAACCAATCAGGAAATCTTATCTTCAGATATTGTTGAAGCTGGTAGATCTAGTTTCAATAAAGAAATGTGTTCTCAACAGCTTCTTGGTCATGACTTGACAAATGGAACAATCACTTGCCATGCTTCGGGGTTGGACTTTAAAGACATGCCTCAGAATTGTGATGTATGCATTCCTGAATCTGTTCTAGATGACATGTCTCCTAAGGATCTGATTATTTATGAAAGAAGTGATGATGCTTGCTTACATGTGAAAGAAAATCCTGCGCATGTTTTTCTCAGTTCTGTGCAAAAGGACCTGCCAACTGCTCAGGATTTTACTGGGGGTGTAAAAGCAAAGAGCTATCAATTGGAAAACATGGCAACTCTTGCAGAAAAGACACAAGATGAAGTTGTGGGTCAAACAGGCAATGCTGAAATGATGATTATGTCTTCAAATTTACCAAAATTAGTATACACCAGAAAAAAGCTCCGAAATGATATTCCCTTCCAAGAAAATTGTTCAGTCATGGAGTGTACTGAATATGACAAATTTAAACATGTTACTCCTGAAATGTATACTGCCAAAGACACTTTACATCCCTCAGAAATCATTCTAGTAAACAATTCTAATGATAAACCATGTGAAACAGATGATACTGCAGGTTTATGTGTTCAAACACCTCAAATTCGTAGTGATGTTCTGGGTGGACATAGCAACCTAGTGGATCCTAACCCAACATCGTCTCAGAATCTAACCCTGTTTGCTGATGAAAATAAGTGCTTTGGTACCAAGGAGGTTCAATTAATTTCAGAACCAATGCCCCTGCAAAACCAGGAGCTCAAGAATAATCTGGGCAGCAGTGTTAAGTTTGTGGGACGTTACTTGCACCCAATGCCTGTTTCATCCTTATTTTTAAGCACAAGAGAGGATGAAATCCATGTTTGTGTCTTATGTGGCTATCTGACTGGTCAGTACAGGACCCTGTTCACGTACAAGGTAGCTATTGCTGAACCAACTTTAGGGTGCCCTTCTGTCATGGCTCACAGCTCAATACTGTTGCCAGATCCAAAACATAACTTCATAAAAGAAACTATGGTGGAAAGATCTGGGGTGCAGTTGACTCCTGGTGGACAGTATGTTGTCTTAATAGGCAGCATAAAGACCCCCAATTGCAGGGAAGGAAAGATTGATTGTCATTGCTCAACATGTAAATCAGTCTGCTCTGAGAAGAACGCTTTGAAGATTGTCCAAGTAGAACATGGTTATGTATCAGTTGTAACAACATTGGAAACTGTTGACAATGTGCATTGTATATTGGTTTGCGAACCTAACCGACTTGTTTCTGTCGGAGAGAGTGGGAAACTGCAGGTGTGGGTCATGAATTCAAAATGGAGCGAAAAGATAGAGTACTTCATTATTCCAGCTGATGGCTCTGTATCCCCTGGCATTATGGAGTTGAAGAGGGTTCCGAAGTGTACTCATTTGGTTGTTGGTCATAATAGTCGTGGGGAATTTAGTTTATGGGATATTGCAAAGTGTAATTGTGTTACAAGTTTCTCTGCTTTAAAAAGTCCAGTAAATGAGTTCTTTCCAATAAGCTTGTTCCAGTGGCAAACAAAAGGCTCAGGATTCAGCAATGTGAATATAGAGGAGCAGGCTGATAAACTTTTAGAAGCAACCAATTTGTGGTACTCAGAGCAGAGAGATATCTGTTGGTTTTCACCAATAGAGGAAGATGTTGCTATGTGGCTTTTTGTCTCGACTACCTCTGACCTTGATTCTTGCCATAATCATGTTTCAACTTCAAGTAGTTATGATATACATACAGCTAGAAGTTGGAGGCTTGCTCTTTTGATGAAAAATAGCATAATTTTTGGAAGTCCCTTGGATCTAAGGACTTCTGGTAATGGTGTTTCTTGTGGTTATGGAATCATCAGTACAAGTGATGGAGTGGTGTATATGTGGGAGTTGTCTAAAGGATCCAAGCTTGATACTCTGCATCATTTCCAAGGTATGTTGCAATGTGCCACTTTCACTTGTATGCTTTGA

Predicted protein sequences of Glyma16g13365

Limit To All Plant Sequences

>Glyma16g13365.1   sequence type=predicted peptide   gene model=Glyma16g13365   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKTRSAEKAAQVDAEDRTDGLEIISIGSLYKGSWDKKYWTTSRGKDRYPYPVGYQAVRAYNGTTYKMEICEGVNGPRFLISSDDGSSSSGKTPDQAWEEFQKKGCPRIKIWHGKRLSSKMDGLELFGFKNQFIQRLLRELVTDVNGIAERSLVSPNICDGVTRTDHDNCTNVGTYPDLLTCLGKPRVTGKRSRCELKNKKLNVRARSQSPELTCSRPSIVQNEKSLGQRSSTIHYGSEVLEVHNQIGVPVLLQRISSVCKSSNCISSKNELLLNPIEISDEKKVGAVPSRGWTGFLYSEDCKTTELTAEDLPQDVELKISNLLVTPEDKKLMPLCSKESVGCIDIDLCAPDTIDFVQENTHDSAPSELDKYAYNETACQITSGDLLNTEHKEVLKSISNPSSEKSEFGSAGQDVAKSMMALLLPQAVPLLRTVSTDKEFTVRPSDMLPCQVNSKDEQKGYSVDVLPSDVIMTEAAHGEQGQKIHGCTDSHSNTPNFEHMRSIVPDSFEYSQCDDYKTNQEILSSDIVEAGRSSFNKEMCSQQLLGHDLTNGTITCHASGLDFKDMPQNCDVCIPESVLDDMSPKDLIIYERSDDACLHVKENPAHVFLSSVQKDLPTAQDFTGGVKAKSYQLENMATLAEKTQDEVVGQTGNAEMMIMSSNLPKLVYTRKKLRNDIPFQENCSVMECTEYDKFKHVTPEMYTAKDTLHPSEIILVNNSNDKPCETDDTAGLCVQTPQIRSDVLGGHSNLVDPNPTSSQNLTLFADENKCFGTKEVQLISEPMPLQNQELKNNLGSSVKFVGRYLHPMPVSSLFLSTREDEIHVCVLCGYLTGQYRTLFTYKVAIAEPTLGCPSVMAHSSILLPDPKHNFIKETMVERSGVQLTPGGQYVVLIGSIKTPNCREGKIDCHCSTCKSVCSEKNALKIVQVEHGYVSVVTTLETVDNVHCILVCEPNRLVSVGESGKLQVWVMNSKWSEKIEYFIIPADGSVSPGIMELKRVPKCTHLVVGHNSRGEFSLWDIAKCNCVTSFSALKSPVNEFFPISLFQWQTKGSGFSNVNIEEQADKLLEATNLWYSEQRDICWFSPIEEDVAMWLFVSTTSDLDSCHNHVSTSSSYDIHTARSWRLALLMKNSIIFGSPLDLRTSGNGVSCGYGIISTSDGVVYMWELSKGSKLDTLHHFQGMLQCATFTCML*

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