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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma16g13320

Feature Type:gene_model
Chromosome:Gm16
Start:14252228
stop:14253222
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g13320
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25440AT Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:9224294-9225505 FORWARD LENGTH=380 SoyBaseE_val: 1.00E-56ISS
GO:0042761GO-bp Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0050291GO-mf Annotation by Michelle Graham. GO Molecular Function: sphingosine N-acyltransferase activity SoyBaseN/AISS
UniRef100_G7I7W0UniRef Annotation by Michelle Graham. Most informative UniRef hit: CRM domain-containing protein, putative n=1 Tax=Medicago truncatula RepID=G7I7W0_MEDTR SoyBaseE_val: 2.00E-95ISS
UniRef100_I1MMB8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MMB8_SOYBN SoyBaseE_val: 3.00E-148ISS

Expression Patterns of Glyma16g13320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g13320 not represented in the dataset
Glyma16g13320 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g13320 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma16g13320
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g13320
>Glyma16g13320.1   sequence type=CDS   gene model=Glyma16g13320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCCTCAAAAGAAAAAATAACGTGCCAGTTGGAAGACGAGGAATTTACCAAGGTCATCAAACTTTGAAAGTGGTGAAGACATTTTCAGCAGCGGAGGTTAAGGAGATTGCTGCTGAGCTGGCTAGATTGAGCGGAGGTATAGTGCTTGACATTCATGAAGATAACACAATAATAATGTACAGAGGGAAAAACTACTCTCAACCCCCAACACAGATCATGTCTCCACGAGTCTCTCTTTCAAGAAAGAAGGCATTGGATAAATCCAAATACAGGCTTGAACAAGAGCTTGCAATTCTTCGTGCACAATTTAAAAGTTCAGCTGAAAGTAAAACAGAAGCTGCTGAGGCAATCCAGAACAGTGGCAGAGAGAGTATTGAGTCTGGGAACCGTGAAATGATGAATGATAACATTGGGTGCACAGAGGATGAGACAGATATGAACTCTGAATTGGATTCTGATTCGGATAAGTTATCTGATATATTTGAGACTGATTCAGATACTGAGAATTTCGTAAATGAGGAGAAACCTCTTAACTTGGACGATTTTGATAATTTTCCAGAGCAAAGCAATGGAGAAATGAATGATTTTGAGGAGCATCTGCAACAAATGTCTCTGAAGTAA
Predicted protein sequences of Glyma16g13320
>Glyma16g13320.1   sequence type=predicted peptide   gene model=Glyma16g13320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLKRKNNVPVGRRGIYQGHQTLKVVKTFSAAEVKEIAAELARLSGGIVLDIHEDNTIIMYRGKNYSQPPTQIMSPRVSLSRKKALDKSKYRLEQELAILRAQFKSSAESKTEAAEAIQNSGRESIESGNREMMNDNIGCTEDETDMNSELDSDSDKLSDIFETDSDTENFVNEEKPLNLDDFDNFPEQSNGEMNDFEEHLQQMSLK*






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